| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2697 |
|---|
| Symbol | |
|---|
| ID | 4174457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3286684 |
|---|
| End bp | 3287847 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638055715 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662263 |
|---|
| Protein GI | 109899008 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000409361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGTTAC CTTTTATTCG GTACTTGTAT ATGATTTATC AACACGAATA TTTGTACGGA
CAAATTTTAA TGAGTTTGAA ATTGAATAAA CAATTTTTGA TTTTAATCAT AGGCGCACTG
TTAGCGAGCT TCACTCTTGC CAAACATGCC TATGCAGATT CAAACGATGC ATTAGCGCCC
AAAAGTAGTG TGCAAGACGC CCTTGCAATG CCACTACATA CCGTGACGAT TGCCACGGTA
TCGTTGGAAA AAAGCCTATT GTTTTACCGT GATGGTATGG GCATGCAGGT TGAAGGGCCT
TTAAAAATAA GTCCTGCTCT GGAAAAAACA CACCGTGCAC TATGGCAAAT GCCAGACGAT
CTAAGTTGGC AGACTTATCG CTTATATCGA AAAGGGGTAA ACAGCGCCAT ACAAATTCGT
CTACTTGTGC TGAGTAAGCC CATGCCGACC ATCCATGATA GTTGGAACTC GAGAGAGCTA
GGGCCTTTCT CTTTGGGCTT TCCCAATACG GATACCATTG CGCTGGATAG ACACATTCGT
ACCATAGGTT TTGGGGCACT CAATACCCTT GAAAGCTACC CTATCCCACG CGCGGATGGT
AGTACCTACC AAATAGACGA AACCATTTTT AATGCCCCAG ATTTTAATCA TGGAGTCGCT
ATCACCCGTG GCAATGGTAT GGCGCAATTG GGCCCAACAG ACGCAAACGG CAAAGGTGGG
CCTGCCTATT CGGCACAAGT GATCACAGAT TCAGCATCAC AGCTTACCTT TTATACGGAC
GTACTTGGCC TTGAAATTCG CTCAGACAGG GTATTCAAAT CCGCTGGTGA CAAAGGGGCA
ATGAATCTGC CCAATGGCAC CGAGTTCAGA TTCGCCATTG TATACAGTAA AGGCGCGACG
ACTGGCCACA TGCTGTTTGT GGATTTTCAC AACGTTGAAC CGATCAAACC CAAAAATGCA
CCTAGCTTAC CGAATATTGG CTTAGGCATG TGGAGCTTCC CTGTACGCTC GATACAACAG
GTCATGGATA ATGCCAACGC ACACGGCGCA ATGATAGTCA GTCAGCCTAA ACGGGTTAAC
GATCCGCTTG TGGGCGAATC CATGGTTGCC ACGTTACGTG CCCCCAACGG CTTTTTAATT
GAAGTGTTTG AGGTGCAACC CTAA
|
|---|
| Protein sequence | MQLPFIRYLY MIYQHEYLYG QILMSLKLNK QFLILIIGAL LASFTLAKHA YADSNDALAP
KSSVQDALAM PLHTVTIATV SLEKSLLFYR DGMGMQVEGP LKISPALEKT HRALWQMPDD
LSWQTYRLYR KGVNSAIQIR LLVLSKPMPT IHDSWNSREL GPFSLGFPNT DTIALDRHIR
TIGFGALNTL ESYPIPRADG STYQIDETIF NAPDFNHGVA ITRGNGMAQL GPTDANGKGG
PAYSAQVITD SASQLTFYTD VLGLEIRSDR VFKSAGDKGA MNLPNGTEFR FAIVYSKGAT
TGHMLFVDFH NVEPIKPKNA PSLPNIGLGM WSFPVRSIQQ VMDNANAHGA MIVSQPKRVN
DPLVGESMVA TLRAPNGFLI EVFEVQP
|
|---|
| |