| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2694 |
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| Symbol | |
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| ID | 4174454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3281367 |
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| End bp | 3284204 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055712 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662260 |
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| Protein GI | 109899005 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00189695 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACACT TTACACATAG TTTTACCCAT ACCAAACTTG CCAGTGCCGT GGCGTTTGCA
CTAATAAGTT TGCACACCAC TTCACCTGTT TACGCTCAAC AAGCGGACGA CCAAGAAGTA
GAAGTTATCA ATGTGAAAGG CGTCAGAGGT GCATTGGTTA GCGCAGCAAA TATAAAACGT
GATTCAGATG GGGTCGTTGA TGCGATTACT GCACAAGATA TAGGTAAATT CCCTGATACC
AATTTGGCTG AATCGCTGCA ACGTATTACC GGTGTGTCAA TTGACCGCTC CAACAACGAG
GGGAATCAAG TCACGGTGCG CGGCTTTGGA CCTAGCTTTA ATTTAGTCAC CCTCAACAAT
CGTCAAATGC CCACATCATC CACTTTGTTA GAAGACGGAA TTGATCGCAG CTTTAATTTT
CGTGAAATTG CCGCAGAGAG TGTGTCAGGT GTAGAGGTAT ACAAAACTGG TAAGGCGAAC
ATTTCCTCTG GTGGCATCGG CTCTACTATT AATATAAAAA CCGCGAAACC TTTTGATTAT
GATGGCTTCA AAGCCGTGGC AACGGTCAAA GGCGTAGTGG ATACCAGTGT CGAAGTGGGC
GATAGCGTTA CACCCGAGGT GTCAGGTATG GTGAGCCAGC AATTTGCAGA CGGTAAAGTC
GGTGTGCTGT TGTCTCTATC ACACGCTGAG CGTGACAGTC GTAAGGAACG TGTCGGCACA
CCTGGCTGGG TGCCTGAACG AGGTTCTAAC GTTGATAAAA GTGGCATAGA TACAAATCTA
AATCCAAGCC GCACACACTG GGCACCATTG TCCATCAGTG TGGATACCCA CGATAACCAC
AGAGAGCGAC AAAATGCGCA ATTGGTGCTG CAAATGGCAC CAAGCGACAC CTTAGTTGCA
ACATTGGACT ACACCCTTTC ACGATTTGAA GAAACCTCGA ACATTAATCG CACCAGCTTT
TGGTTTGACG GTGATACAGG AGGTGACGCA GATGCTAACG GCACAGTCAC TAATCCGTTT
AGAAATGACG ATGAGTTGAA TTTTTGGTCG TATCACAACT ACTTTAATAC TGAAAATGAT
TCAATCGGCT TGAACCTTGA GTATCAAGCC ACGGAAAACC TAAGTTTTAA TTTCGATTAC
CATGACTCAA CGTCACATTC GCAGCCAGAT GGGCGCAACT CAGAAACCAT CATGAACCTG
AAAAACCCAC GTGTGAACGA TACCAATGGC GATGGTATTG CCGACCGTGG CGGCGTAGAT
GTGAGCATTA CGACTCACCC AAATGGTCGA CCAGATATAT TCTTCGATGC AGCCGATTTA
CCCGGTCAAG ACCCTTACGC CAGCCAGAAC ATTCAATTTG ATTTGTTTCA AACCCGCGGA
TACGAAATTG AAAACAACAT CAAGCAAGCA CAGTTACATG GACAATGGCT CAATGCCTAT
AGCGGCGCGT TAAACAAAAT CAATTTCGGA GTGGCCAATA CCGATTACAC AATAGACACC
TATGCCAAGC GAACCATCGC CTTCGTGCCG CTTGATATTT CTACTTTGGA TTTACAGTTC
AATAGCAGCA ATGGCTTTGG CAAAGACATA GGTGGCAACA GCAACTTCTT TCCTTTGCTA
TCGAGTTACA GCGCTCAAGA CGCTTTGCAA CTGGTGAAAG ATCAAGGTTT TTACTTTCAA
GAAGACCCTG TATACAACGG TGTAAATGAA GAAACCTTCG CCGTTTATTT ATCCTTTGAT
TTTGAAACAG AATTCAATCA GATGCCGATT AAGTTCAATG CAGGCCTACG CTGGGAAGAC
ACAGATGTCA CATCAACATC TCTTCAACGG GGCATTAAAT CTTTAAACTA CGTTAATACA
GCAGGGCGTT TTGGCGAAGT GTTTACCGAC GAGCCGACCA ATATTCGTCT TGAAGGCAGC
TATACACGAT TATTGCCAAA TATGGATTTC AACATCGAGT TTACTGACGA CTTAGTCGGT
CGCGTATCAT ATAGCACCAC CTTGAGCCGC CCTGATTTAT CATCATTGTT TCCCTCAACA
ACCATAGATG CAAGACCTGA CGGTCCTTAC AGCGCCTCAA TTGGCAATCC TGGATTACTG
CCTCTTGAAT CAAAGAACAT CGATTTATCG CTAGAGTGGT ATTATGGCAA TGGTAGCTAC
GCATCAGTAG GTTTCTTCAA AAAGTACGTT GAAAACTTTA TCGGTATTAC TACTCGAGAA
GGCACGATGC CTGATGTGAA CGGCAACCCT CTTACCGATC CGAGTATCAT TCCTCGCCCA
GGTTGCCCAG ATGAAGTAGT CGGCGGCAAC CCCGCGTGTT TCTCTACCCC TGACGATCCA
GAAATTACCT TTTTAATCTC ATCGCCCGAT AATTTAAATG ATGCCGAAGT AGATGGTTGG
GAGCTCAATC TACAACACAT TTTTGGTGAA AGCGGATTTG GTACAGTGGC CAACATGACC
TTTGTCGATG GAAACGTTGA ATACGATGTG TATGACGTTA ACAGCACCTT TGCGTTAACC
GGATTGAGCG ATTCAGCAAA CCTTATCGCA TTCTATGAAA AAGACGGCTT TCAGGCACGT
ATTGCTTACA ACTGGCGGGA TGATTTCTTA TTGGCGCTCT ACCAACCTCA GCGTCAAGGG
GAGCCAAACT TCGTTGAAGC GTATGGCCAG TGGGATATTA ATGTCAGCTA TGACATTAAT
GAAAATCTGT CGGTGTTCGT CGAGGGATTA AATATCACTG AAGAAACTAC CCGCAGACAT
GGCCGCTTTG CCGATCAACT CATCAGTGCA GAGCAGTTTG GTGCAAGGTA CAACATAGGT
GTCAGTGCTA AATTTTAG
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| Protein sequence | MKHFTHSFTH TKLASAVAFA LISLHTTSPV YAQQADDQEV EVINVKGVRG ALVSAANIKR
DSDGVVDAIT AQDIGKFPDT NLAESLQRIT GVSIDRSNNE GNQVTVRGFG PSFNLVTLNN
RQMPTSSTLL EDGIDRSFNF REIAAESVSG VEVYKTGKAN ISSGGIGSTI NIKTAKPFDY
DGFKAVATVK GVVDTSVEVG DSVTPEVSGM VSQQFADGKV GVLLSLSHAE RDSRKERVGT
PGWVPERGSN VDKSGIDTNL NPSRTHWAPL SISVDTHDNH RERQNAQLVL QMAPSDTLVA
TLDYTLSRFE ETSNINRTSF WFDGDTGGDA DANGTVTNPF RNDDELNFWS YHNYFNTEND
SIGLNLEYQA TENLSFNFDY HDSTSHSQPD GRNSETIMNL KNPRVNDTNG DGIADRGGVD
VSITTHPNGR PDIFFDAADL PGQDPYASQN IQFDLFQTRG YEIENNIKQA QLHGQWLNAY
SGALNKINFG VANTDYTIDT YAKRTIAFVP LDISTLDLQF NSSNGFGKDI GGNSNFFPLL
SSYSAQDALQ LVKDQGFYFQ EDPVYNGVNE ETFAVYLSFD FETEFNQMPI KFNAGLRWED
TDVTSTSLQR GIKSLNYVNT AGRFGEVFTD EPTNIRLEGS YTRLLPNMDF NIEFTDDLVG
RVSYSTTLSR PDLSSLFPST TIDARPDGPY SASIGNPGLL PLESKNIDLS LEWYYGNGSY
ASVGFFKKYV ENFIGITTRE GTMPDVNGNP LTDPSIIPRP GCPDEVVGGN PACFSTPDDP
EITFLISSPD NLNDAEVDGW ELNLQHIFGE SGFGTVANMT FVDGNVEYDV YDVNSTFALT
GLSDSANLIA FYEKDGFQAR IAYNWRDDFL LALYQPQRQG EPNFVEAYGQ WDINVSYDIN
ENLSVFVEGL NITEETTRRH GRFADQLISA EQFGARYNIG VSAKF
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