| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2686 |
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| Symbol | |
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| ID | 4174446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3271374 |
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| End bp | 3273059 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638055704 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_662252 |
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| Protein GI | 109898997 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.50945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAATA ATCATTATGA CGCAATCGTT GTTGGCTCAG GTATCAGCGG TGGTTGGGCA
GCAAAAGAGT TAACCGAAAA AGGGCTTAAA GTGTTAATGC TGGAAAGAGG CAGAAACATT
GAGCACGTAA AAGATTACAC CAACGCCCAT AAAGAAGCGT GGGATTACCC CCATCGCGGT
GAACGCACAC AGGAAATGAT CGAAAATTAT CCAGTGCTAA AACGCGACTA TCCTCTTAAT
GAACCAACAC TTGGCATGTG GGCGAACGAG AAAGACAGCC CGTATGTGGA AGAAAAGCGT
TTTGATTGGT TTCGTGGTTA CCACATGGGT GGACGTTCAC TCACTTGGGG TCGTCAAAGC
TATCGATTAA ACAAAGAAGA CTTTCTAGCT AATGCTAAAG AAGGGATCGC GGTGGATTGG
CCAATTCGCT ATGAAGATGT ATCCCCTTGG TACGATTACG TAGAACGCTT CGCCGGGATC
AGTGGCAGTA AAGATGGATT AGACGTATTG CCTGATGGTG AATATCAAAT GCCCATGCCG
CTTAACTGCG TAGAAAAAGA TGTGGCGGCT AGAATTCAGA AAACCTTCAA AGGCCAACGT
CATTTAATTC CGGGCCGAAC CTCGAACATG ACTGAGCCTA AGCCAAAAGA AGGGCGCACA
AACTGCCAAT ACCGCAATAA ATGCTGGTTG GGGTGTCCTT TTGGTGGGTA TTTCAGTACG
CAATCATCGA CGCTGCCAGC AGCGGTTAAA ACCGGTAACT TGACGGTGCG ACCTTATTCT
ATCGTGACTG AAATTTTATA CGATAAAGAT AAGAAGCGTG CTAAAGGTGT GGCGGTGATA
GATGCCGAAA CGAACGAGAC TTACGAATTC ACCAGCAAGA TATTGTTCGT CAATGCGTCG
TCGTTTAACT CCACATGGTT ATTGATGAAC TCAGCGACCG ATATATGGCA AGGTGGTTTG
GGCAGCAGCA GTGGAGAGCT TGGTCATAAT GTAATGGATC ATCACTTTCG AATTGGTGCC
CACGCTATGG TGGAAGGCTA TGAAGATAAG TATCACTATG GCCGTCGTCC AAGTGGTTTC
TATGTGCCAC GTTTTCGTAA CTGGGGTGAT GACAAGCGCG ATTACGTGCG TGGTTTTGGT
TATCAAGGCT CTGCCAGTCG TCAAGGCTGG GGACGCGATG TCGCCGAAAT GGGTATCGGA
GCTGACCTAA AGAATGCGAT AAGCGAGCCA GGCTCATGGC AAATTGGCAT GACGGCGTTT
GGTGAAATGT TGCCAGATCA TAGCAATCGT ATTTTCTTAG ATAAGACCAA GAGAGATAAA
TGGGGCTTGC CTGTCTTAGC CATGGACGTT GAGATAAAAG ACAACGAGAA ACGCATGCGC
AAAGACATGA TGCAAGATGC TATCGATATG TTCGAAGCTG CAGGCATGAA AAATGTTCAA
GGTTATGATG CTGATTACTT CCCGGGACAA GGTATTCACG AGATGGGCAC GGCGCGAATG
GGGCGCGACC CTAAAACCTC GGTGTTAAAT GGTAATAACC AGGTGTGGGA CGCCTTAAAC
GTATTTGTAA CTGACGGTGC GTGCATGACG TCCGCGTCTT GTGTGAACCC TTCGTTGACC
TATATGGCAT TAACTGCCCG TGCAGCAAAT TTTGCTGTTG AAGAGCTGAA GAAAGGAAAC
CTGTAA
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| Protein sequence | MANNHYDAIV VGSGISGGWA AKELTEKGLK VLMLERGRNI EHVKDYTNAH KEAWDYPHRG
ERTQEMIENY PVLKRDYPLN EPTLGMWANE KDSPYVEEKR FDWFRGYHMG GRSLTWGRQS
YRLNKEDFLA NAKEGIAVDW PIRYEDVSPW YDYVERFAGI SGSKDGLDVL PDGEYQMPMP
LNCVEKDVAA RIQKTFKGQR HLIPGRTSNM TEPKPKEGRT NCQYRNKCWL GCPFGGYFST
QSSTLPAAVK TGNLTVRPYS IVTEILYDKD KKRAKGVAVI DAETNETYEF TSKILFVNAS
SFNSTWLLMN SATDIWQGGL GSSSGELGHN VMDHHFRIGA HAMVEGYEDK YHYGRRPSGF
YVPRFRNWGD DKRDYVRGFG YQGSASRQGW GRDVAEMGIG ADLKNAISEP GSWQIGMTAF
GEMLPDHSNR IFLDKTKRDK WGLPVLAMDV EIKDNEKRMR KDMMQDAIDM FEAAGMKNVQ
GYDADYFPGQ GIHEMGTARM GRDPKTSVLN GNNQVWDALN VFVTDGACMT SASCVNPSLT
YMALTARAAN FAVEELKKGN L
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