| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2665 |
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| Symbol | |
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| ID | 4174425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3248574 |
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| End bp | 3250619 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055684 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_662232 |
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| Protein GI | 109898977 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCTAG GCGTTTTTCG AGACTTTAAA TCTCAGGCCA TCATTGCTTT TGTAATGTGT
TCGTTACTGG CGTTAACTGC CCACCGCTTG GGGTTAATGG ACGTTTCACT CGATTTACTT
TCCCCAGACA CCCTGGTGGC TATGGAGCAC CAACATGAAG GCGGCATGCG CAGCGAGTTG
CATACTGGCG AACATTCAAT CGCCATCGCC TGCGAACTTT CTGATATCAG TGCTTACTCC
CTTTGTTTAT TAAAACTTAA CTACAGCCGG AGAAACCATT TTTCTCGAGG ACTCGATCTT
TCAAACTATC AATCTGTTGA AATAGTCGCC ACATTAAAAA GCCCTTCAGG CAAAGAAAAC
ATTAAACTTT ATTTAAGAAA CAATAACCCT GCTTATTCAT TACCACACAT TGATATTAGC
GATAAATTTA ACACCATCGA ATTTGAACTG GGGGATGAAA GCACCACCTT GAATGTGCCC
AGCAAAGCGC TGTTCGTTGC CCAGTGGTGG AAAAGAGAAA GAGGTATAGG GTATGAGCAA
TCTCATGTCG ATATCTCAAA CATCGTTTCT ATCGAGCTGG TCATTGATGA AGCGAAGGAG
CTTGGTGACT ACGTATTGAC GGTGCACAGT TTGAGCATGT CAGGGGAAGC GATAACAGAG
CCTGAGCTGC TTAGATTGAT TTTACTCTTA CTCTTTATGG TCATAGTACT GCTGACCATC
AGGCAGAAAA ATAATCTCAA AAAAATATCG AGTACCGACC CGCTCACTGG TTTGTTGAAC
CGGCGAGGAA TGATTTCAAA AGTCCGAAAA GAGTTCAAAC ATATCGTTGA GCACCATACG
ATAAGCTTAT TTTATTTTGA CGTTGACGAC TTTAAAAAGA TAAACGATAC CTACGGCCAC
CCCATTGGCG ACGAACTTCT GGTAGCAATT TGCCAAAAGG TTAAGCTGAT CATAAGCGAA
ATGAACTTTG AGGGGCGCTA CTCGTTCGCT AGGTTAGCGG GTGATGAATT TGTTCTGACA
ATTACTGATT GTGACAAAGA AAAAGCGATA CAAGTCAGTC GTAGAATCGG TCAGCAATTG
ATTGATCCAA TCCCCGTTAG CGGCTGCGAG GTTAAGGTTG GTATTAGTCT TGGTCTAGCG
TATTCCAGTG ATAAAAAAGC ATCTTTCAAA GCGCTACTGT CTCAAGCAGA CTCTGCGATG
CGCTGTGCAA AAGAGCAAGG AAAAGGGCGA TTCAAGGTGT TTGATGATAG CCTCGCTTCT
GCGATCTATC TAAAAAAATC CATTGCTGAA AATTTAAAAA ATGCACTGAT AAACCAAGAT
TTCTCACTCA GGTTTATGCC CATATTCAGT TGTTCCGATT TAAAACCTAG ACGCGTTGAG
GTGCTTATTC GCTGTGAGTC AGACGCCATG CAAGGGGTTA CTCCGGATGT TTTTATTCCT
ATTGCGGAAG AATTTGGCAT CATCCAAAAC ATTGATTTAT GGGTGGCAGA GACTAGCTTC
GCCGCTATGC AAATGCATTT TCTGACACCT GGTCGTTCGT GCCCAGTCTT TTGCATTAAT
ATTTCAGCCA TTGAGCTACT CAACAGCAGC TTTCCGAAGC AGTTAAAAAA GCTCATGCAT
AAATATCAAA TACCCCCTGA ATATATTGAG TTGGAAATCA CCGAAACTAG CTTAATTGAA
GCCGGGGAGA CGAGTTTAAG CATATTAAAA GAGCTTAAAA AATTAGGGAT TAATTTAGCC
TTGGATGACT TTGGAACAGG CTACACGGGT TTTAATCAAC TATTGGCCTA TCCAGTAGAT
TGCTTGAAAA TAGACCGTAC TTTCGTGGCT GATATCGACA GCGAGCACGC TTCACACTTG
CCTATGGTGA ACGCGATCAT GTCAATCGCC CAGTCCTATA ATTTAGTCAC GGTAGGGGAA
GGGGTCGAGA CCCAAGGGCA GTTAGATTAC TTGCGTTCAG TCTCATGCAA TTATGTCCAA
GGTTATTTTC TCGCAAAACC GCTTTTACTT GATGATTATC TTTTGCTGCT AAACGATTAC
GCCTGA
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| Protein sequence | MTLGVFRDFK SQAIIAFVMC SLLALTAHRL GLMDVSLDLL SPDTLVAMEH QHEGGMRSEL
HTGEHSIAIA CELSDISAYS LCLLKLNYSR RNHFSRGLDL SNYQSVEIVA TLKSPSGKEN
IKLYLRNNNP AYSLPHIDIS DKFNTIEFEL GDESTTLNVP SKALFVAQWW KRERGIGYEQ
SHVDISNIVS IELVIDEAKE LGDYVLTVHS LSMSGEAITE PELLRLILLL LFMVIVLLTI
RQKNNLKKIS STDPLTGLLN RRGMISKVRK EFKHIVEHHT ISLFYFDVDD FKKINDTYGH
PIGDELLVAI CQKVKLIISE MNFEGRYSFA RLAGDEFVLT ITDCDKEKAI QVSRRIGQQL
IDPIPVSGCE VKVGISLGLA YSSDKKASFK ALLSQADSAM RCAKEQGKGR FKVFDDSLAS
AIYLKKSIAE NLKNALINQD FSLRFMPIFS CSDLKPRRVE VLIRCESDAM QGVTPDVFIP
IAEEFGIIQN IDLWVAETSF AAMQMHFLTP GRSCPVFCIN ISAIELLNSS FPKQLKKLMH
KYQIPPEYIE LEITETSLIE AGETSLSILK ELKKLGINLA LDDFGTGYTG FNQLLAYPVD
CLKIDRTFVA DIDSEHASHL PMVNAIMSIA QSYNLVTVGE GVETQGQLDY LRSVSCNYVQ
GYFLAKPLLL DDYLLLLNDY A
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