Gene Patl_2662 details

Gene Information

• Locus tag: Patl_2662
• ID: 4174422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3243369
• End bp: 3245291
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638055681
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_662229
• Protein GI: 109898974
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.750308
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATTAG TCAGGCAGTT GTGGTTATCC GTCATACTAA TCCTAATGGC CAGTTCACTG 
ACTAATTTCG TTATAAGCAC CTATTTCGAG CGAAAAAATT TGCAAGAACA ACTCTTTTTG 
AAAAACGTCG ATGATGTAAA TTCCTTGGCA ATGATGCTTT CTCAAGATGA GAAGCAATTG 
ACGGACATCG AATTATTGAT AACTGCCACG TTCGATACAG GTCACTATGA GTTTATCGAA 
CTGATTGATC CTGCTGGTAA AAGTGTCTTC AAACGTGAGT ATAAGGAAAA AACAAAGTCT 
AATGTGCCGG AGTTTGCACG CAGAATATTC GATTTTGAAG TGAAAACGGG TGTAGCGCAA 
GTGAGCAGTG GCTGGAAGCG CGTTGGCACT TTGTATCTTG CAAGCCATAC CCAATATGTT 
CACGAAGCGT TATGGCACCG AACTAAAGCA TTTTTTATCA GCTTTCTGGT TATTTCTCTA 
ATAGCCGGTG CGATTGGCTC GTTTGTGTTG CACGTTCTTT TAAGGCCCTT GAACATGGTA 
GTTGAGCAGG CTCATCGTTT TTCTGAAAAA CGTTTTATGA CATTACCTAT TCCGCGTACC 
ACAGAGTTTG CCAAAGTGGT TACAGCTATG AATTCATTAG CTCTGCGTTT CAAAAAAATC 
ATAGAAGAGG GTAACAAGCG ATTAGATGAA CTGCGATATA GGAGTCAGCA CGATGAGTTA 
ACAGGGTTAG CTAACTCTGA GACTTTTGAT ACATTGTTGG ATGCTCAATT AAAATACCGT 
GACCGAGAGG GGCATAACGT ATTGTTCATG ATAAAAATCT TTGGCATGAG CGAAATATCA 
CAGCGTCTTG ATAAGCACAA AGTAAACGAT ATTATTGTTA ATTTCACACA AGTGATTTTA 
GATTTTGCTA AACAGATTGA AGGGCGCTTT ACCGATGTAC GATTTGGCCG AGTCAGTGGT 
TCTGAGTTTT GCATATTACT GACTGAAGCT GAAGATATTC AGCAATTAAG TGATGTCCTA 
GTGGATGCGG TACGCGCGTT TAAAGGGCGC TCTCGTGATA CGTACGAGCT GTATGCTTTG 
CATGCAGGGG TATACCTCGC ACCCGATGAA ACACGCACTG CACTAATGCG CAGGGTACAA 
GCACTACTGA TTAAAGCATC AAAAGAAAGG GCGCTCGCGC TAACCGATAA TAAGCTTACT 
ATTGTTGCGC CATTTCAAGA TGATATTCAG TGGCGAAAAG CGCTTAGTCA TGCGCTGACA 
AGTGGTGTGC ATTCAATTAC TTTTCCCGTG GTTAAAAAAG ATGGTAGTGC AATTCATTAT 
CAAGCATTGA TGGGCTTGGA ACTGGATAAT GATGTGCGTA AGGGCGGCTA TTTTGTTCAC 
TGGGCGCGTA AGCTAAATAT GATCCCCCAG CTCGATTTTC GGATGATTGA GTTTATGATC 
TCTAAAATTG AGCAAGAAAA TAAAGCATAT GACTACGCTA TTTTGCTATC GCAAGAGACG 
ATGGTTTGCG AAAAATCAGT GCAGCGTTTA CGTAAACTAC TAACTGAACA CCCTAAAGTG 
GCACACCATC TCTGCCTTGA AGTGAGAGAG AGTGTTGCCT CCGCTCATTT TGAATTGTTC 
AGGCATTTCT CTGTGACACT CAAAGAAACT GGTTGTAAAG TTGGTTTAAA ACGGGTGGGT 
GATTCCTTTT CTACCCTCCT TGATTTACAA GAGTTAGGAT TGGATTACAT TAAAATTGAT 
AGTGCGTTCG TGTTTAATGT TTCGATCAAC GCCACTAATC AAAACTTCCT TCGTGGCTTA 
TGTTCTTTAG CGCACTCATT GGGGATCATC GTTATCGCAG ATGGGGTAAC CAGTAAAGAT 
GATGCTAAGT CACTTTATGA GAATGGCTTC GATGGGATTA TTTCCCTGAT GCAGCAGTTC 
TAA 

 

Protein sequence

MSLVRQLWLS VILILMASSL TNFVISTYFE RKNLQEQLFL KNVDDVNSLA MMLSQDEKQL 
TDIELLITAT FDTGHYEFIE LIDPAGKSVF KREYKEKTKS NVPEFARRIF DFEVKTGVAQ 
VSSGWKRVGT LYLASHTQYV HEALWHRTKA FFISFLVISL IAGAIGSFVL HVLLRPLNMV 
VEQAHRFSEK RFMTLPIPRT TEFAKVVTAM NSLALRFKKI IEEGNKRLDE LRYRSQHDEL 
TGLANSETFD TLLDAQLKYR DREGHNVLFM IKIFGMSEIS QRLDKHKVND IIVNFTQVIL 
DFAKQIEGRF TDVRFGRVSG SEFCILLTEA EDIQQLSDVL VDAVRAFKGR SRDTYELYAL 
HAGVYLAPDE TRTALMRRVQ ALLIKASKER ALALTDNKLT IVAPFQDDIQ WRKALSHALT 
SGVHSITFPV VKKDGSAIHY QALMGLELDN DVRKGGYFVH WARKLNMIPQ LDFRMIEFMI 
SKIEQENKAY DYAILLSQET MVCEKSVQRL RKLLTEHPKV AHHLCLEVRE SVASAHFELF 
RHFSVTLKET GCKVGLKRVG DSFSTLLDLQ ELGLDYIKID SAFVFNVSIN ATNQNFLRGL 
CSLAHSLGII VIADGVTSKD DAKSLYENGF DGIISLMQQF