| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2661 |
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| Symbol | |
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| ID | 4174421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3241840 |
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| End bp | 3243261 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055680 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_662228 |
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| Protein GI | 109898973 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGAA AGCCTACCAC CACAGAGCAA GATTCATTTA ATAAACTTGG CGAAATATTT
GGTTCTAACG AAGAGCCCAA AAGCAGTTAT GTAGGCAAAA TATTTAATCG ATGGTTATCG
CCGCCAAAAA ATAATGACTG GGTACTCGAC GCTGATTGGG AACAACTTCA ACAAAACCCC
TTAAAAGCTA GAATGTTATT GTACTTCATT GTCTTTGCAC TGACTGCATT GCTCATTTGG
TCCGCCTACG CCACCCTCAA TGAAGTCACC AGAGGTGATG GCAAAGTGGT ACCGACAAAC
CAACTACAAA TCGTACAATC CTACGACGGT GGCATCGTCA AAGAAATTTT GACTCGAGAA
GGGCAAACAG TAAATGCTGG GGACGTACTC CTTAAACTGG ACCCAACGAG ATTTATCTCG
TCTCTCAGAG AAAATCGCAG CCAATTTTTA TCCCTCAGTG CAAAACTTGC TCGCTTGAAA
GCCCTAACCG AAAAGACACC TCCAATTTTC TCAGCAAACT TAGTCAAGCA AGCGCCAGAA
ATTGTCAGTT CTGAAAGAAA TCAATATGCC GCCAATGTAG AAGAATTAGC GCAACACATT
TCAATGTATC AGCAACAAAC GAGGCAACGA GAACATGAGT TGCAAGAGGC CCAATCAGCA
AAAGAGCAAT ACGTTCGAAC AAAAGATTTA ATTCACAGAG AGCTCGCTGT AACGCGACCG
CTACTGAAGT CTGGCGCTAT CTCAGATATC GACATCATTC GTCTTGAACG GCAGCTGGTT
GAGATAGAAG GAGAGATAAA ACGCAACGAA TCCGTTATGC GTCGTAATGA GTCTGCTATT
CAAGAGGCCA AATCTAAGAT CCGAGAGAAA GAACTGACCA CTATCAATGG CTGGCGAGAT
GAATTAAGTG ATGTTTCAAT TGAGCTTAAC TCATTAAGGG AAACAGAATC AGGCCTCGCC
GATGTGGTGT ATCAAGCGGA TTTAAAGTCA CCGGTCAAGG GCACAATTAA GCGGTTATTT
ACCAATACCA TAGGAGGCGT AGTCCCACCA GGTAGTGATG TCATTGAAAT TATTCCACTG
GATGATCAAC TGATCGTTGA AGCTAAAATA AAACCTAAGG ACATCGCATT TTTGAGGCCA
GGGCAAACCG CTATGGTTAA ATTCACCGCC TATGACTTCG TCATATACGG TGGCCTTGAA
GCCGAAGTCA CCCACATCAG CGCCGATACC ATCACCGATG AAAATGATGA GACCTATTAT
GTCGTTAGAC TTCAAACTGG CTCCAACAGC TTTAAAAACG GCATGCAGAT TATTCCAGGA
ATGACAACCC AAGTAGATAT TATTACCGGC AAAAAAACGG TATTGGATTA TATTTTAAAA
CCTTTGCTTC GCGCCACATC GATTGCCATG ACTGAGCGCT GA
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| Protein sequence | MSRKPTTTEQ DSFNKLGEIF GSNEEPKSSY VGKIFNRWLS PPKNNDWVLD ADWEQLQQNP
LKARMLLYFI VFALTALLIW SAYATLNEVT RGDGKVVPTN QLQIVQSYDG GIVKEILTRE
GQTVNAGDVL LKLDPTRFIS SLRENRSQFL SLSAKLARLK ALTEKTPPIF SANLVKQAPE
IVSSERNQYA ANVEELAQHI SMYQQQTRQR EHELQEAQSA KEQYVRTKDL IHRELAVTRP
LLKSGAISDI DIIRLERQLV EIEGEIKRNE SVMRRNESAI QEAKSKIREK ELTTINGWRD
ELSDVSIELN SLRETESGLA DVVYQADLKS PVKGTIKRLF TNTIGGVVPP GSDVIEIIPL
DDQLIVEAKI KPKDIAFLRP GQTAMVKFTA YDFVIYGGLE AEVTHISADT ITDENDETYY
VVRLQTGSNS FKNGMQIIPG MTTQVDIITG KKTVLDYILK PLLRATSIAM TER
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