| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2659 |
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| Symbol | |
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| ID | 4174419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3238198 |
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| End bp | 3239553 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638055678 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_662226 |
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| Protein GI | 109898971 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTT ACAAATTTTT CTTCGCCGTC ACTTTGTTAT TATCGTTAAA AACTTACGCT
AAAGATAACG ATAGCGTTGC CAGCGCAATT TATGATGCAC TAGAGACCAA TCCAGAGGTC
CAAGCAACTT GGCATACATT CCGTGCAGCC AAGCATAGTC TAAGAGTTGC CAAGGCGGGT
AATAAACCGA CCGTCGATTT AGTGGCGAAT ATGCAATATA AAGATCGCAA TTACGGTAGT
GACACCGAAT TTTCGAGTAA TGATGTGGAA ATGGTATTAA CCCAGTCCTT GTATAATGGT
TCGCGTGTGA AACACGAGGT TAATCGCTTC AGACAAGTTC AAATGGTTAG GTACTTTGAA
TTTACCAACA GCGTCGAAAC GGCAGCAAGA GATACCGCTT TGGCATACTT AGACGTTCAG
CAGTATCAGG CTTTGGTCAA GCTTGCAGAA GACAACCTTA ATACCCATGA AAAAGTGTTT
TCACAAATTG AAGAAAGTGT CAGTGCCGGG GTCTCAAGAG CCGCAGATCT AGAGCAAATC
AACGGGCGTT TGGCCTTGTC TGAATCAAAT GTCATAACCG ACGTCAACAA CCTTTACGAC
GTGAGCGCGA GGTTCTTGCG CATAGTGGGT CGTTACCCTG CAGTTAATTT ACAAGCTATC
CCTACTCAAG ATCTTCAAAT ACCAAATGAG TTGAAAGAAG TACTAGAAAA AACGTATCGC
ACCAGTCCTT CCTTTTTCGC CAGCATGCAC AATATCGAAG CTGAAAAATT AGGAGTGAAA
ACACAGAAAT CGAACTATAA ACCTCAGGTC GATTTCATCG CTAGTTACGG TAGTCAAAGC
AGAGACCAGT TCGGTTTAAA CAACACTATA ACTGAAGGCT CAGTTGGGCT TCAGTTTCGC
TACAATCTAT TCCGCGGCGG TCAAGACAAA GCGTCGATAA AGCAAGCTCA AGAACAGGTC
AATGTGGCCA AGGATCTTAG AGATAAAACC TGTCGCGATG TGCGTCAAAA CATTCAAATT
GCATTCAATG AATACACGAC GTCCAATCGT CTTTTACCGA TATTGAATCA ACACAAATTA
TCGTCTAGTC GGGTCAAAAC AGCATACAAA GATCAGTTCG ATATTGGACA GCGTACTTTG
CTAGATGTAC TTGATGCGGA GAACGAATAC TTTGAATCTA GCCGTGCATA TATCGATGCA
CAATATCGTC AAAAACAGGC GTTAATAAAT GTGTTAGCCG AAATTGGAAT ATTGGTTAAA
AGCTTAAACA TTTCACTTAA CAACTTACCA AACATTAACG ATTCAGACAA AGTAGATATA
CATTCTGACA TTAAATATTC ATGTCCTAAA AATTAA
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| Protein sequence | MNFYKFFFAV TLLLSLKTYA KDNDSVASAI YDALETNPEV QATWHTFRAA KHSLRVAKAG
NKPTVDLVAN MQYKDRNYGS DTEFSSNDVE MVLTQSLYNG SRVKHEVNRF RQVQMVRYFE
FTNSVETAAR DTALAYLDVQ QYQALVKLAE DNLNTHEKVF SQIEESVSAG VSRAADLEQI
NGRLALSESN VITDVNNLYD VSARFLRIVG RYPAVNLQAI PTQDLQIPNE LKEVLEKTYR
TSPSFFASMH NIEAEKLGVK TQKSNYKPQV DFIASYGSQS RDQFGLNNTI TEGSVGLQFR
YNLFRGGQDK ASIKQAQEQV NVAKDLRDKT CRDVRQNIQI AFNEYTTSNR LLPILNQHKL
SSSRVKTAYK DQFDIGQRTL LDVLDAENEY FESSRAYIDA QYRQKQALIN VLAEIGILVK
SLNISLNNLP NINDSDKVDI HSDIKYSCPK N
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