| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2645 |
|---|
| Symbol | |
|---|
| ID | 4174405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3210419 |
|---|
| End bp | 3211819 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055664 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_662212 |
|---|
| Protein GI | 109898957 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGA TACAACAGAT GAAAAGCAAT GCAGCTTCCA GAAAGAGCAA AAGTAAATTT
GGCGTATTAG CGCTGATTTT CTTAAGTGTG GTGATCAACT ATATGGATCG TACCAATATA
TCCGTTGCCG CCCAAGCGAT CTCTGACGAT TTAGAGCTCA CCAAGGTGCA AATGGGGATC
ATCTTCTCAG CATTCGCGTG GACGTACTCC ATCATGCAAA TTCCAGGCGG CATGTTAGTC
GATTCTGTGC GTATTCGTAT TTTGTATCCG GTGATTTTAG TCGCTTGGTC AGCGGCAACC
ATAGTACAAG GTTTGCTAAG TAGCTTTTCA GCTATTGTTG GTTGTCGAAT GGCGATTGGC
TTTTTTGAAG CACCTTCTTA TCCCGCGAAC AATAAAATAG TGACGCAGTG GTTTGCTGAG
CAAGAAAGAG CTGGGGCGAT TGCCGTCTAT ACCTCAGGCC AATTTATAGG TTTGGCGTTC
TTAATGCCGG TACTTGCCAT TATTCAGCAG TGGTTTGGCT GGCGAGGCTT GTTTTTTATC
TCTGGCGGTA TAGGTATTTT ATGGGCTGGC GTGTGGTATT TACTGTACCG AGATCCTGCA
CCAGAGCACG ATGACGAAGA AAACATCAAC AGCCAAGAGG CAATAAAAGC GCATACTCAG
GCGCAAGTAG CTAAGGCCCC AGTCAAATCT CAAGCACAGG CATCAGCAAG CTGGAGCAAC
CTTAAAATCG CTTTTTCCAG TCGCAAACTC TGGGGCATCT ATATAGGTCA GTTCTGCTTA
GGGGGCACGC TCATTTTCTT TTTAACTTGG TTTCCGACCT ATTTGGCTGA GTATCGCGGG
TTAAGTGAAT TAAACACTGG CTTTGTGGCA TCGATCCCAT TTTTAGCAGC TTTTTGTGGC
GTTCTGCTTT CGGGGTTTGT ATCTGATTGG TTAGTGCGAA AAGGCGTATC GAACGAGGTC
GCCCGCAAAA CCCCAATTAT CTTAGGCTTA CTGCTATCCA GTTCGGTTAT TTTTGCCAAC
TACGTTGAGA GCACCCAGTG GGTCACGTTC TTCTTGTCCG TCACGTTTTT TGGTAACGGC
TTAGCATCCA TTAATTGGGT GTTTGTCTCG CTCATCGCGC CGAAACATAT GGTTGGCCTA
GTGGGCGGTT GCTTTAACTT TATCGGCGGC TTGTCTGCTG TCACTGTTCC TATCGCGATA
GGGTACCTAG CCAAAGACGG TGACTTCAGG CCGGCCTTGG TATTGGTCGC GTGTCTCGCC
TTGATTGGCT TGTGCTCCTA CATCTTTTTA GTGGGTAAAG TCGAGCAAAT TCAAGTGCCA
AATTCAGATG AGAACGATGA AATATTGCCA GCTGCGCAAG CGGTAAGCCC ACAATCCACC
TCATCAGGAG GAGCACAATG A
|
|---|
| Protein sequence | MTTIQQMKSN AASRKSKSKF GVLALIFLSV VINYMDRTNI SVAAQAISDD LELTKVQMGI
IFSAFAWTYS IMQIPGGMLV DSVRIRILYP VILVAWSAAT IVQGLLSSFS AIVGCRMAIG
FFEAPSYPAN NKIVTQWFAE QERAGAIAVY TSGQFIGLAF LMPVLAIIQQ WFGWRGLFFI
SGGIGILWAG VWYLLYRDPA PEHDDEENIN SQEAIKAHTQ AQVAKAPVKS QAQASASWSN
LKIAFSSRKL WGIYIGQFCL GGTLIFFLTW FPTYLAEYRG LSELNTGFVA SIPFLAAFCG
VLLSGFVSDW LVRKGVSNEV ARKTPIILGL LLSSSVIFAN YVESTQWVTF FLSVTFFGNG
LASINWVFVS LIAPKHMVGL VGGCFNFIGG LSAVTVPIAI GYLAKDGDFR PALVLVACLA
LIGLCSYIFL VGKVEQIQVP NSDENDEILP AAQAVSPQST SSGGAQ
|
|---|
| |