Gene Patl_2638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2638 
Symbol 
ID4174398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp3200754 
End bp3201386 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content49% 
IMG OID638055657 
ProductTetR family transcriptional regulator 
Protein accessionYP_662205 
Protein GI109898950 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGTGC AAACTACAAA ACCAAGACGC GGCCGGCCGC CCAAAGTCGC TCGTGACAAT 
TACGACACAA AAGCAGAGCT TCTGCGCGTT GGCTTAGAGC ACCTAACCGA ATTTGGCTTT 
GCCTCGTCAG GCATTGATAC CATGCTGAAA AAAGCCGGTG TGCCTAAAGG CTCTTTTTAT 
CATTACTTCG CCAGCAAAGA AGCCTACGGT GAAAGCCTGA TTGCGCATTA CGATAGCTAC 
TTTTCACGTA AGCTAGATAT GCACCTGCTT AACGAACAAC ATGCCCCTTT GTCGCGTATC 
GCAAATTTTG TGGATGACGC GGCTATTGGC ATGGCGCGTC ACGGCTTTAA GCGCGGCTGC 
TTGGTGGGCA ACTTAGGCCA GGAAGTGGAC GCCTTACCCG TTAGCTTTCG AGCACAACTG 
ACAAATGTTT TTTTGAATTG GCAGCGCAAG CTAGAAGCTT GTCTCATTCA AGTAAAGGCT 
AATGGTGACA TAAATCAAAG CGCGGACTGC GGGGCACTGG CTGAGTATTT TTGGATCAGT 
TGGGAGGGTG CAGTCAGCCG AGCGAAGTTG GTACAAAGCG ACAAGCCCCT AATGCTTTTT 
TTGCAGTATT TTTTACAGGC CCTGCCCAAA TAA
 
Protein sequence
MNVQTTKPRR GRPPKVARDN YDTKAELLRV GLEHLTEFGF ASSGIDTMLK KAGVPKGSFY 
HYFASKEAYG ESLIAHYDSY FSRKLDMHLL NEQHAPLSRI ANFVDDAAIG MARHGFKRGC 
LVGNLGQEVD ALPVSFRAQL TNVFLNWQRK LEACLIQVKA NGDINQSADC GALAEYFWIS 
WEGAVSRAKL VQSDKPLMLF LQYFLQALPK