| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2604 |
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| Symbol | |
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| ID | 4174364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3166306 |
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| End bp | 3168426 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055625 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662173 |
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| Protein GI | 109898918 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000145461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGA AACACTCAAC TGTGTTAATC GCGGTATTAG CTGCGTTAAC GTCAATGGCG
CACGCCCAAG AAAAGAACTT ACACAAAGAT GAAGCGGACT TAGAAACGCT ACTTATCACT
GCATCACCCA TCAGCAAGAC GGTACTGCAA TCCAGTACGC CAGTGTCTAT TTTAAGTGGC
GAGGAATTAG ACCAAAATCA GGCTGCTACC TTGGGGGACA CCTTAAGTAA TGTGCCGGGT
GTGCATAGTT CGTACTACGG ACCGGTGGCA AGTAGCCCAA TTATTCGTGG CCTAGATGGC
CCTCGTATTA AGGTAGTGCA AAATGGTTTG GACGCATCCG ACGCCTCTCG AGTAGGGCCT
GATCACCAAG TTGCCACTGA AACCTCAACG GCCAGCCAAA TTGAAGTACT AAGGGGGCCT
GCAACCTTAC TTTACGGCAG TGGTGCCATT GGTGGTGTGG TTAACGTGGT AGATAACCGC
TTGCCAGCCC AGCGCCAAGA AGGACTAACC GGTGAGGTAT TCGCCCAATA CGACAATGTT
GCAGATGCGA AAACGGTATC TACTGATTTG AACATGGGAA CTGGGGATTT TGTGTTTCAT
GTTGACGGCT ACAATCGCGA CACCGACGAT TATAAAATTC CTGTGCCTGG CAATGTGGAT
GATGAAGGTG GTAGCGGCGA ATTAGATAAT TCCTCCGTCA GTGCTCACGG TTTTAACCTA
GGGGGTGGTT GGATCACCGA TGATACGCGC GTTGCATTGT CTTACGGTCG CATGGATTCA
GAATACGGCT TGCCCGTAGA AGAAGACGTT TACATTAAAT TGAAACAGGA CCGCTACCAG
GCTGTTGTTG ATTGGAAAAA CCTCGATGGT TTCTTTGAGG CGGTACATTT TCAAAATGGC
TTCACTGATT ACCAGCACAC GGAATTTGAA GGTGAAGAAG TAGGCACCAC CTTTAAAAAC
AAATCGGTGG AATCGCGCTT ATGGGCGGAT CATCAAGAAG TGGCTGGCTG GAAGGGGGTT
ATGGGCGCTC ATTATAACTA CAGTGATGCC TCAGCGCTGG GTGAGGAAGC CTTTTCGCCC
CCCACCAAGA CCAATTCAAT CGCCGCATTT GTTATGGAAG AGCACGACTC AGGGCCGTTG
CTCTGGCAAC TAGGCGCAAG AGTTGAAACC CTGACCCATG AGGTTGATAA CAGTTTCTAT
GATCAGCTAG ACACAAATAA CAGCATCGGT TTTAACGATA AAGATTACAC TTCGTTCTCA
GGCTCAGCCG GTGTGGTGTG GAGCCTAAAT GAGCATCACT CTTTAGCGTT CAATTATGCC
TATTCCCAGC GGGCGCCTTC AGCCTCTGAA ATGTTTTCAT ACGGCCCTCA TGTGGGCTCG
CAAACCTATG AAATTGGGGG CGGTTTTAAC ATCGATGAGC AAAACGGTGT TTACAGTGTT
AATCAGGCAC CTAGCAGTCT AAACAAAGAA GAATCTAACA ATATAGATGT GACGTACCGT
TACCAAAACG ACACATGGAA CGCCACCGCA AGCGTATTTT ACAACCAAGT AGGCGATTAT
ATATTCGAGC AAAGTACTGG CTTAGTGTAT GCCGGTGGTG AACTAATCAC CGCAGAAAAT
TATGCTGCAA ATGTGGCATT AAACGGCGAA TATGAAGAAG AAACCGATGG ATTATCTGTT
ATCAACTTTG AGCAAGAAGA CGCCAAATTG TATGGCTTTG AAGCCCAAGT TGATGTGCAC
ATGACTGAAT CGCTGCGCTG GGAAGTCTTC AGTGATTATA CCCGTGCAGA GTTGGATGAA
GGGGGCAACG TGCCGCGAAT TCCACCGCTG CGGGTCGGTA GCTCGCTGCA TTATGAGCAA
GGCAATTGGC ACGGCGAAGT CGAAGTGGTG CGCAACAGTA AACAAGATAA AATTGCTGCG
TATGAAACGG ACACAGACGG CTATACCATG TGGTCAGCTG CAGCGAATTA CTATCTAGCG
CTTGATGATC TTGATATGAC GTTCTACTTA AAAGGCAGCA ATTTAACTAA TGAAGAGGGA
CGAGTGCACT CATCTTACGT AAAAGATGAA ATACCTCTGC CTGGTCGTTC AGTTAGCCTG
GGTGTGCGCG CTCGGTTTTA A
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| Protein sequence | MKTKHSTVLI AVLAALTSMA HAQEKNLHKD EADLETLLIT ASPISKTVLQ SSTPVSILSG
EELDQNQAAT LGDTLSNVPG VHSSYYGPVA SSPIIRGLDG PRIKVVQNGL DASDASRVGP
DHQVATETST ASQIEVLRGP ATLLYGSGAI GGVVNVVDNR LPAQRQEGLT GEVFAQYDNV
ADAKTVSTDL NMGTGDFVFH VDGYNRDTDD YKIPVPGNVD DEGGSGELDN SSVSAHGFNL
GGGWITDDTR VALSYGRMDS EYGLPVEEDV YIKLKQDRYQ AVVDWKNLDG FFEAVHFQNG
FTDYQHTEFE GEEVGTTFKN KSVESRLWAD HQEVAGWKGV MGAHYNYSDA SALGEEAFSP
PTKTNSIAAF VMEEHDSGPL LWQLGARVET LTHEVDNSFY DQLDTNNSIG FNDKDYTSFS
GSAGVVWSLN EHHSLAFNYA YSQRAPSASE MFSYGPHVGS QTYEIGGGFN IDEQNGVYSV
NQAPSSLNKE ESNNIDVTYR YQNDTWNATA SVFYNQVGDY IFEQSTGLVY AGGELITAEN
YAANVALNGE YEEETDGLSV INFEQEDAKL YGFEAQVDVH MTESLRWEVF SDYTRAELDE
GGNVPRIPPL RVGSSLHYEQ GNWHGEVEVV RNSKQDKIAA YETDTDGYTM WSAAANYYLA
LDDLDMTFYL KGSNLTNEEG RVHSSYVKDE IPLPGRSVSL GVRARF
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