Gene Patl_2569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2569 
Symbol 
ID4174325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp3114367 
End bp3115008 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content44% 
IMG OID638055587 
Product50S ribosomal protein L25/general stress protein Ctc 
Protein accessionYP_662139 
Protein GI109898884 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1825] Ribosomal protein L25 (general stress protein Ctc) 
TIGRFAM ID[TIGR00731] ribosomal protein L25, Ctc-form 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAG GAATTTTCAC TCTAGACGCA GAAGTCCGTA CTGATTTAGG GAAAGGTGCG 
AGCCGCCGCC TACGTCACGA AGACAAAGTA CCAGCTGTAT TATACGGCCT TGGTAAAGAA
GCCGTTTCTT TAACTTTGTC ACATAACAAA GTTTTCCAAG CGCAAGAATT CGAAGCTTTT
TACTCTCACG TTCTTACCTT GAATGTTGAC GGTAAAAAAG TTGAAGCCGT TATTAAAGAC
ATGCAACGTC ACCCGTTCAA GCCTCGTGTA ACTCACTTGG ACTTTTTACG TGTTGATGCG
AAGCAAGCTC TTCAAACAAA CGTACCTTTA CACTTCGTAA ACGAAGATAA AGCAGAATCT
ATTAAAACTC ATGGTGGCCA CGCTGAGCAC CACATGGTTG ACGTAGAAAT TAGCTGTTTG
CCAGCGGACT TGCCTGAGTT CATCGAAGTT GACGTGACTA ACGTTGAACT TGGTCAGACT
CTTCACTTGT CAGACATCGC TCTTCCTGAA GGCGTAACGT CTGTTGAGCT TGCTAAAGGC
GAAGATCACG ATCTAGCTGT TGTAACCGTT AAAACTGCTA AAGGCCCAAG CGTAGAATCT
GAAGAAGATG ATGCCGAAGG TGAAGAAGCT GCTGCGGAAT AA
 
Protein sequence
MSEGIFTLDA EVRTDLGKGA SRRLRHEDKV PAVLYGLGKE AVSLTLSHNK VFQAQEFEAF 
YSHVLTLNVD GKKVEAVIKD MQRHPFKPRV THLDFLRVDA KQALQTNVPL HFVNEDKAES
IKTHGGHAEH HMVDVEISCL PADLPEFIEV DVTNVELGQT LHLSDIALPE GVTSVELAKG
EDHDLAVVTV KTAKGPSVES EEDDAEGEEA AAE