| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2568 |
|---|
| Symbol | |
|---|
| ID | 4174324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3113044 |
|---|
| End bp | 3114120 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055586 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_662138 |
|---|
| Protein GI | 109898883 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAG TTTGGCAGTT TATCCCTTAC CCGTGGCTGG TTGTTGGCGG GCTAGTGGCT
ATCAGTGTAA TCACCATGTA CTTAGTAAAA CGCTTCGTAT TGGTGCAATT ACAAAGAATA
AAGCGCAGTG AAGGCCGACA TGTCACCAGC GTGCTGCTCG ACTCTTTGAG TAAACCGCTG
AATATATTTA TTCTTGTCAT CAATCTTTAC CTCCTGCAAT ACCTGCTACT TAAATACGAA
TTGATATCCG ATCAGTTTTA TAAACAAGTC GATGTCACGG CGCAAATAGG CATTATCATC
GCATTGCTGG TATTTGCAGA GCGATTTTGC AATCAACTTT TGGTCAGTTA CGCTGACACG
TCAGAGGCCC TACGCAACAG CCAGAGTATT ATTCGAGGTA CCAGCAAAAT ACTCATTATC
GGGATTGGCA GTTTAGTCAT TTTAGGCACC CTAGGAATTT CTATTACGCC TATTGTGGCA
TCTTTGGGTA TTACCTCACT TGCCGTGGCA CTCGCCCTGC AACCCACCTT GGAAAACTTT
TTTTCTGGCG TACAACTGGT TATCGATAAA CCCATACGGG TGGGCGATTT TGTTGAGTTG
GATTCTGGCG AGCAAGGCTT TGTCGAAAAA ATTGGTTGGC GCTCTACTTG GATTAAAATG
CTACCGAACA ATATTGTGGT GATGCCCAAC AGCATGCTGT CACAATCAAA GGTGATCAAT
TATTACTACC CTGAAAAAGA GTTGTCTGTA CCGGTCGATG TGGGAGTGCA TTACGATTCA
GACTTAGAGC ACGTCGAGCG TGTGGTCTTA GAGGTCGCAA GGAAAATATT GCACTCTCAT
AAATGGGGCA TAGATGACTA TGATACGTTT GTGGTTTTTC ACACCTTTGA TAGTTCAAGT
ATAAATTTTA CTGTGATGCT GCGGGCTGAA GAGTATTTTA ACCGCTTTTT TATTAAATCA
GCTTTTATAA AAGCGTTACA TAAACGTTTT CGTCAAGAAG GAATTGTGAT CCCCTATCCC
ATTCGGGCAA TCAATACACA ACAAGAGCAG TCCCAGGAGG TGAATACTTC GCGTTGA
|
|---|
| Protein sequence | MQEVWQFIPY PWLVVGGLVA ISVITMYLVK RFVLVQLQRI KRSEGRHVTS VLLDSLSKPL
NIFILVINLY LLQYLLLKYE LISDQFYKQV DVTAQIGIII ALLVFAERFC NQLLVSYADT
SEALRNSQSI IRGTSKILII GIGSLVILGT LGISITPIVA SLGITSLAVA LALQPTLENF
FSGVQLVIDK PIRVGDFVEL DSGEQGFVEK IGWRSTWIKM LPNNIVVMPN SMLSQSKVIN
YYYPEKELSV PVDVGVHYDS DLEHVERVVL EVARKILHSH KWGIDDYDTF VVFHTFDSSS
INFTVMLRAE EYFNRFFIKS AFIKALHKRF RQEGIVIPYP IRAINTQQEQ SQEVNTSR
|
|---|
| |