| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2550 |
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| Symbol | |
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| ID | 4174305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3093175 |
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| End bp | 3094311 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055567 |
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| Product | mandelate racemase/muconate lactonizing-like protein |
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| Protein accession | YP_662120 |
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| Protein GI | 109898865 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000249838 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGTCA TTACCAAACT AGACACACCT GCCATGAACA GTTCACAAAT TCAGTCAGTC
AATGTTGAGT TATTCAACGT GCCCCTTGAC GAAGTGTTGA ACGATGCTAA GCACGGCGAT
CATACCCACT TTGAGCTGAT CCTATGCACC ATTACTTGTA CCGATGGTAC TCAAGGCGTG
GGTTATACCT ACACAGGTGG TAAAGGTGGA CGCGCTATAT ACTCACTGCT TAATGACGAA
CTAAAGCCTT TCTTGATGGG TAAAGATGCT AGCTGCATCA ATCATTTATG GGAAGAAATG
CAATATCACT TGCACTATGT TGGTCGTGGC GGTTTAGTCA GTTTCGCCAT ATCCGCAGTC
GATATCGCCC TGTGGGACAT TCATTGCAAG GTTCTTAATC AACCCTTGTG GAAAGTAGCT
GGGGGCTGCA GTGACCGCGT AAACTGTTAT GCAGGAGGCA TTGACCTTAA TTTTTCCACT
GAAAAATTGC TCGGCAATAT CCAAGGCTAC TTAGACTGCG GCTTTGAAGC GGTCAAAATA
AAAGTGGGCA AAGAAGATTA TCGTGAAGAC GTGGCCCGCG TGGCGGCTGT GCGCAACCTG
ATTGGTCCTG ATGCGATATT TATGGTGGAT GCAAATTATT CACTTACAGT CAATAAAGCC
ATTAAGTTTG CTCAGGCGAT AGAGCAGTAT GATATCACCT GGTTTGAAGA ACCGACCATT
CCTGATGATT TTGCCGGTTT TGCTCACATT GCCAGCAAAA TCAATATTCC GTTGGCCATG
GGCGAAAACC TGCACACTAT TTACGAATTC AACCAAGCGA TAAGCCAAGC CAAACTTGGG
TTCTTACAAC CTGATGCATC GAATATTGGC GGTATCACTG GTTGGCTAAC GGTTGCCCAG
ATGGGCTACG CGAACAACTT ACCTATTTGC AGTCATGGCA TGCACGAATT ACATGTATCT
CTTATGGCAT CTCAGCCAAA TGCGGGTTAC TTGGAAGTAC ACTCGTTTCC CATTGACCGA
TATACCACTC ACCCTCTGAA ACTTGAAAAT GGCAAAGCCG TTGCGCCCAG TACACCCGGT
GTAGGCGTCG AGTTCAAGAC AGAGTTACTT CTTCCCTATT TAGTTAAACA TTCTTAG
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| Protein sequence | MSVITKLDTP AMNSSQIQSV NVELFNVPLD EVLNDAKHGD HTHFELILCT ITCTDGTQGV
GYTYTGGKGG RAIYSLLNDE LKPFLMGKDA SCINHLWEEM QYHLHYVGRG GLVSFAISAV
DIALWDIHCK VLNQPLWKVA GGCSDRVNCY AGGIDLNFST EKLLGNIQGY LDCGFEAVKI
KVGKEDYRED VARVAAVRNL IGPDAIFMVD ANYSLTVNKA IKFAQAIEQY DITWFEEPTI
PDDFAGFAHI ASKINIPLAM GENLHTIYEF NQAISQAKLG FLQPDASNIG GITGWLTVAQ
MGYANNLPIC SHGMHELHVS LMASQPNAGY LEVHSFPIDR YTTHPLKLEN GKAVAPSTPG
VGVEFKTELL LPYLVKHS
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