| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2547 |
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| Symbol | |
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| ID | 4174302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3089048 |
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| End bp | 3091822 |
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| Gene Length | 2775 bp |
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| Protein Length | 924 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055564 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_662117 |
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| Protein GI | 109898862 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000166222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAACG CAAAATTTAA ACTGAATGCC ATATGCATGG CGATGTTAGT GTCATCCACT
AACGTTTATG CACAGCAGGA GTCCACAGCA GCCGAAGACG CCGACCTTGA AGTCATTAAT
GTGACTGGTA TTAGAAGTGC GCTAAGTAAA TCTGCATCGA TCAAGCAAGA ATCATCAGGT
GTTGTAGACG CTATTTCAGC AGAAGACATT GGTAAGTTAC CAGACACCAA TTTGGCCGAG
TCATTACAGC GTATCAGTGG TGTGTCGATT GATCGCGCCA ACAACGAAGG TAACAAGGTG
ACTGTGCGTG GTTTTGGGCC TAACTTTAAC CTAGTGACTT TGAATGGTCG TCAAATGCCA
AATTCTTCTG CATTACAATC GGACGGTGTT TCAAGAAGCT TTAACTTTCG AGAAATTGCC
TCAGAGAGTG TTTCAGGTGT CTCTGTGTTT AAAACGGGTA AAGCTAATGT GGCCTCGGGT
GGCATTGGTG CAACCATCGA TATCAGTACT GCAAAACCCT TTGATTACGA CGGTTTCAAA
GCCTTTGCAA GTGTCAAAGG AGTCCATGAC TCCAGTGTAG ACACAGGTAG TAGCATTACC
CCAGAAATCT CTGGCATGAT CAGTCAAACA TTTGCTGATG GTAAGTTTGG CGTTTTATTG
TCGGCATCTC ATTCAGAGCG TGACAGCGGT CGTGACCGTG TTGGTACATC ATCAGGCTGG
GTACGTAATC GTGCAAATCC AAACGGCGTT GACGCCAGTG CCATTAACAC AAGTAATAAT
CCGACGGGAG CCTATTGGGT ACCCTGGACA CCTGAAATAG AGCGCTTTGA CACCGAGCGT
GAGCGCCAAA ACGCACAGTT GGTGTTGCAG TTCGCTCCAA ACGAAGACAT TGAAGCAACC
TTGGATTACA CCATGTCACG CTTCGAAGAA ACCAGCTCCA CAAACAAACA AGCGTTCTGG
TTCGATAATC CAGCAGGAAC TACTGATGAG AATGGAACCT TAGTTGATAT TACCAATGTC
AATGACGAAC TCAATTTTTG GGCGTGGGAA CGTTATGAGA AAAAAGAAAA TGACTCGGTT
GGTTTTAATC TAAAGTGGCA AGCAACGGAA TCGCTAAACC TCACGTTTGA TGCCCACGAT
TCAACATCTC ATTCGAACCC TGATGGACAA ACAGCGGAAA CATTGGCTAA CTTGAAAAAC
CCATCGGGCT CGGTTGCTTT GATTGGGGCA AACTTTAGCG GAGAAATCCC CTCTATAGTT
GTTGATGATT CCGGCCTAGC TGGTGGCGCG TATAACCCTG ACAACATAGT GTCTGACTTG
TACCAACTGC GTGGTTACGA GATGGAAAAT AATATAAAGC AATATCAGAT AAACGGTAAT
TGGGAAAACA TCGAAGATGG CGCACTAGCA GCGATTAATT TCGGCGTTAT GCACACTGAT
TATCAAGTCG ATACTTATCT TTCTGAGCGT TTCTCATTTG TTGATATTCC TCTTGATGAT
CTTGGACTTA CGTTTGAACC TTTAGGTGGT TTTGCCGACC AATTCTCTGG TGCAAATGCG
TTGTTTCCAT ACATTCCGCA ATTCAGCGCA AATACCTTTG TCGATATTGT TAGAGACCAA
GGTTTATTTC GTGCGCCTGA CGTGACGACG AACGGGGTGA ATGAAAAAAC CACCGCCTTG
TATGTGTCAT TTGATTTCAG AACGGAGTTT AACGATTTCC CTATCGATTT AAATGTAGGG
GTACGTTATG AAGACACTGA CGTAAGTGCT TATTCAGTGC AGCCAGGTAT TGTTGCCTTG
AATTATCGCC ACGCAGAAGA GTTGCGCCCT GTATTTGATA CTACAGCAAC TGCCCAAGAG
CTGGATGGTA ACTACACGCG TATACTACCT AATCTTGATT TTAGTATGGA GCTAACGGGA
GAAGTGAAAA CCCGCTTCTC ATACAGTCGC ACGCTGGCCC GCGCTGGAAT AAGTGCGATG
TTCCCGTCAA CCAACATTGA TGCTAGACCA GAAGGCCCCT TTAACGCATC ACAAGGTAAC
CCTAATCTGC TGCCAATCAC CTCAGATAAC TTCGATTTTT CTGTTGAATG GTATGACGAT
GACGGCAGTT ATGCCTCTGT GGGTTACTTC AAAAAATTCG TAGAAAACTT CATCGGCGCA
GGTGTTGAGC AGCGCGCAAT TAACGATGTG AATGGCAATC CATTGCGAGA CCCAAGTATT
AATCCACGCC CTGGCTGCCC AGATTCATCT GATACGCCAA ACCCAGCGTG TTTAAGCCAA
GCATCTGATC CTATTGTGAT ATTTGATGTG GCTACACCAG ACAATCTGCA AAATCGTGAG
GTTGATGGAT GGGAGTTGAA CGCCCAGTAT ATGTTCTCTG ATACCGGATT TGGTGCCGTG
GCCAACTACA CCTTGGTGGA CAGCGATGAG TCATTTGACC CATATGACTT TGACCAAACG
ATTGCATTAA CTGGCTTAAG TGATTCAGGT AACTTGGTCG GCTTCTATGA AAATGAGAAG
CTTCAAGTGC GGATCGCCTA TAACTGGCGC GATGATTTCT TATTGTCTCT TGGTACTGAG
CCAACGTTCA CTGAAGCGTA TGGTCAGTGG GATTTAAGTA TAAACTACGA GATAAACGAA
ACCTTTACTG TTTATGTTGA TGGTTTAAAC CTGACGGATG AAACGGTTCG TCGTCACGGC
CGCTTCCAAG AGCAACTGAT TTCTGCTGAA CAATATGGTC CACGTTTCAG CTTTGGTATT
AGTGGTAAAT GGTAG
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| Protein sequence | MSNAKFKLNA ICMAMLVSST NVYAQQESTA AEDADLEVIN VTGIRSALSK SASIKQESSG
VVDAISAEDI GKLPDTNLAE SLQRISGVSI DRANNEGNKV TVRGFGPNFN LVTLNGRQMP
NSSALQSDGV SRSFNFREIA SESVSGVSVF KTGKANVASG GIGATIDIST AKPFDYDGFK
AFASVKGVHD SSVDTGSSIT PEISGMISQT FADGKFGVLL SASHSERDSG RDRVGTSSGW
VRNRANPNGV DASAINTSNN PTGAYWVPWT PEIERFDTER ERQNAQLVLQ FAPNEDIEAT
LDYTMSRFEE TSSTNKQAFW FDNPAGTTDE NGTLVDITNV NDELNFWAWE RYEKKENDSV
GFNLKWQATE SLNLTFDAHD STSHSNPDGQ TAETLANLKN PSGSVALIGA NFSGEIPSIV
VDDSGLAGGA YNPDNIVSDL YQLRGYEMEN NIKQYQINGN WENIEDGALA AINFGVMHTD
YQVDTYLSER FSFVDIPLDD LGLTFEPLGG FADQFSGANA LFPYIPQFSA NTFVDIVRDQ
GLFRAPDVTT NGVNEKTTAL YVSFDFRTEF NDFPIDLNVG VRYEDTDVSA YSVQPGIVAL
NYRHAEELRP VFDTTATAQE LDGNYTRILP NLDFSMELTG EVKTRFSYSR TLARAGISAM
FPSTNIDARP EGPFNASQGN PNLLPITSDN FDFSVEWYDD DGSYASVGYF KKFVENFIGA
GVEQRAINDV NGNPLRDPSI NPRPGCPDSS DTPNPACLSQ ASDPIVIFDV ATPDNLQNRE
VDGWELNAQY MFSDTGFGAV ANYTLVDSDE SFDPYDFDQT IALTGLSDSG NLVGFYENEK
LQVRIAYNWR DDFLLSLGTE PTFTEAYGQW DLSINYEINE TFTVYVDGLN LTDETVRRHG
RFQEQLISAE QYGPRFSFGI SGKW
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