| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2538 |
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| Symbol | |
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| ID | 4174293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3077762 |
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| End bp | 3079126 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055555 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_662108 |
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| Protein GI | 109898853 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCCTAA AAATCGAATT CAAAGCCCTT GCCCATTTGG CTTGGCCCTT ATTAATTGCC
CAAGTAACCC AAACATTAAT GGGCGTATCT GACACCATTA TGGCGGGGCG CTTTTCCGCT
ACCGATATGG CCGCTGTGGC CATAGGTTTT AGCTTTACTA TGCCTATGCT CGTATTTATT
CAAGGCCTAA CGTTAGCACT GCCGCCCATT ATTTCGCGCT TTAACGGAGC AAAACAACTA
GATAAAGTCG CCAATGCCAG TTATCAAGTG ATGTGGTTAG CACTGTTTTT TGCCCTACTG
TCCTTGGTGC TCAGCACCTT TCTGGATTTT TTCTTTTCGC TAATTGAAAT GGAAGCAGAC
CTTCGCGTGA TCACTATCGA TTATGTGCGA TATGTACTCT ACTCCATGCC GGCTTTTGCG
TTATACCAAG TGTTACGCAA TGTGTGTGAG GGACTGTCTA TCACCAAACC GAGCATGATC
ATTATGATTA TTGGTTTGCT GGTGAATATC CCTGCCAATT ACGTGTTTAT TTACGGTAAA
CTCGGCCTAC CCGCTTTTGG CGGTGCAGGC TGTGGTATTG CGACTGGCTT GGTGTTTTTG
GCCATGATGT TTGCCACGTG GGTGTACACC CTCAATTCTA AAAAGTTACA ACAATATGCG
CTTTACACGC GTATTTTTGC TCCCAACGTT AAAGACATGT GGGCTAGCCT CAAATTAGGC
TTACCCATTG CCTTGACTAT TTTATTTGAG GTCACACTTT TTACTGTCGT CGCAATCTTA
CTGGCGCCTT TTGGCTCTAC GATTGTCGCA GCGCATCAGG TGGCTCTGAA TTTCTCATCG
TTGATGTTTA TGATCCCATT AAGTTTAGGT ATGGCGACCA GTATCCGAGT GAGTCATCTA
CTGGGTGAAA ACAATCCATC ACAAGCTAAG ATGGCTACCC GCGCAGCACT ATTAATGGGG
TTAACCTCTG CCACACTGAC TGCCACTATG ACCTATTTGG CCCGGGTTCA TATTGGTGAG
CTTTACAGCA ACAACGCTGA AGTCATAAAC ATGGCGGCAG GCCTTATGTT ACTAGCAGCC
CTATTTCAGT TTTCAGATGC CATACAAGTG GTTTCAGCTA CTGCGTTGCG CGGTTACAAA
GACACCGCAG CCATGTTCTA TCTTAGTTTT ATTTCCTACT GGGTAATCGG CATGACGATA
GGCTGCGTAT TAGCCCTCAC TGATTGGATA GTCCCGCGCA TGGCCGCAGC AGGATTCTGG
ATAGGCTTTA TTTGCGGGTT AACCTCAGCG GCAATTTTGC TGGGCCTTAG GTTGCGCCAC
GTACAGCGCC GCCAAGAAAA CATGCCTGTT GAAATAAGCA TTTAA
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| Protein sequence | MTLKIEFKAL AHLAWPLLIA QVTQTLMGVS DTIMAGRFSA TDMAAVAIGF SFTMPMLVFI
QGLTLALPPI ISRFNGAKQL DKVANASYQV MWLALFFALL SLVLSTFLDF FFSLIEMEAD
LRVITIDYVR YVLYSMPAFA LYQVLRNVCE GLSITKPSMI IMIIGLLVNI PANYVFIYGK
LGLPAFGGAG CGIATGLVFL AMMFATWVYT LNSKKLQQYA LYTRIFAPNV KDMWASLKLG
LPIALTILFE VTLFTVVAIL LAPFGSTIVA AHQVALNFSS LMFMIPLSLG MATSIRVSHL
LGENNPSQAK MATRAALLMG LTSATLTATM TYLARVHIGE LYSNNAEVIN MAAGLMLLAA
LFQFSDAIQV VSATALRGYK DTAAMFYLSF ISYWVIGMTI GCVLALTDWI VPRMAAAGFW
IGFICGLTSA AILLGLRLRH VQRRQENMPV EISI
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