| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2506 |
|---|
| Symbol | |
|---|
| ID | 4174260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3040226 |
|---|
| End bp | 3041578 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638055522 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662076 |
|---|
| Protein GI | 109898821 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.767469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA CACAGTGTAT CGGACCAGCC CTATTATCAG GTGCAATAGC GAGCTCTTTC
AGCACATCGG CTGTAGAAGT TAGTGAACAA GAACTGGCGA CACTAAAAGC ACAAATTTCA
GCGTTGCAAG CTCGCTTAGA ACAGCTGGAA AACCAAAATA AGCCCACTAA TACTGCGGCA
AATCCCTCTC TGTCATCCAA CGCAAAATCT ACTCAATCAG TTGATTTAGC CCAGCAAGAT
AAGAAAGTCG AAACAAACAC TGCTGAAACC GAACGTGAAG AGCCTGAATC GACCGATGGG
ATCACCTTTG GCGGTGCCAT TCGAACGAAT TACAGTTATA CCTCTTATGA TGACGGTAAT
AAGAACCGAG GTGGCGACTT CGATTTTGAT ATTTTCCGTA TCAACATGAG TGGAGAAGTA
GGGGGGGTCA CTTTAAATGG TGAAATTCGC TTTTTTGATT ATATGACAGC TGTTAAATAT
GCCTATGCTG GTTATCAATT CAGCGAGAAC TGGCAAGTAC AAGCTGGTAT TACTCAAGTG
CCATTTGGTA ATCAGTCTTA TAATTCGCAG AACTATTTCT TTAGCACTAA CTACTACTTG
GGTTTAGAGG ATGATTTTGA TTTAGGCGTG GTCTTTAAAC GTAGCGTAGC TGACAACTGG
CAGCTAGATG TGGGGTTCTT TAAAAATGAT GAGCTTGGCG GAGTTGATGG CTACGTAGAC
AATCGATCAG ACCGCTATTC ATATGATATT GTTGGTATTC GAGCACAAGG TGATGGCATC
TACGATGAAC CGAGCGAAGG ATTAGGGGAA TACAATACTT TAGCAGGTCG CTTTGCTTAT
CATTTTACCA CCGGGGAGGT GAAAACTGAG GTCGGTGTGT CTGCGTTACA AGGCGGTATT
CATAACGGTG AAAATCGCGC TGGGGATTAT CAGGCGTGGG CGTTTCATAC CAGCAGTCAA
TACAGAAATT GGCATTTACA ATTTCAACAC AGTCAATATG ACTATGATAT TGGTGAGGCT
GACCGCTTAG CCGTTGGCGC GTATTCGTTT TATGATTCAA TTGCTGCTGA TGCTAAATCA
ACCACACTCA ACATTGCCTA TGACATGGCT GTTGATTTCG GACCTGTAAC TGATCTGCAG
TTCTACAACA ATTTTGGTTT GGTATACGAC AAGTCTGACA ACAGCGAAGA TACCATGATG
AATGTGTTGG GCATGTCAGT GGCGGCAGGT GGGTTATTTA CCTATTTCGA TTTGGTGCAC
GCAAAGAATC AGCCTTTTGT GGGGGGCAGC GCTGCGGGTG ATACCGATGA AACGGAGCAA
CGCTTTAATA TCAATATTGG CTACTATTTC TAA
|
|---|
| Protein sequence | MKLTQCIGPA LLSGAIASSF STSAVEVSEQ ELATLKAQIS ALQARLEQLE NQNKPTNTAA
NPSLSSNAKS TQSVDLAQQD KKVETNTAET EREEPESTDG ITFGGAIRTN YSYTSYDDGN
KNRGGDFDFD IFRINMSGEV GGVTLNGEIR FFDYMTAVKY AYAGYQFSEN WQVQAGITQV
PFGNQSYNSQ NYFFSTNYYL GLEDDFDLGV VFKRSVADNW QLDVGFFKND ELGGVDGYVD
NRSDRYSYDI VGIRAQGDGI YDEPSEGLGE YNTLAGRFAY HFTTGEVKTE VGVSALQGGI
HNGENRAGDY QAWAFHTSSQ YRNWHLQFQH SQYDYDIGEA DRLAVGAYSF YDSIAADAKS
TTLNIAYDMA VDFGPVTDLQ FYNNFGLVYD KSDNSEDTMM NVLGMSVAAG GLFTYFDLVH
AKNQPFVGGS AAGDTDETEQ RFNINIGYYF
|
|---|
| |