| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2505 |
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| Symbol | |
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| ID | 4174259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3038444 |
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| End bp | 3040069 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055521 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_662075 |
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| Protein GI | 109898820 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGA ATAAAGATCC GATGATACCG GACGGAGAGG TCAACCCCAT TGATACTGAT
TATCAAGTGG GACAAGACAA TATCGTGGTC AGTGTTGGTC CATTTGGATT AGACATCCAC
AACCGCGTCT TTGCGGTGTC AGGGGTAATG ATTATCGCAT TCGTGGCGCT GACATTATTA
TTTCAAGCGG AAGCCGAACC CTTTTTCGGT AATATTCGAA ATTGGCTAAC GGGTAATTTG
GATGGCTTCT TCATGGGGGC GGCGAATATA TTCGTTATTC TATGTTTGGT ATTGGTCATT
TCGCCTTTAG GACGAGTCCG TTTGGGCGGC ACCGAAGCGA AACCTGATTA CAGTTACTTA
GGTTGGTTCT CCATGCTGTT TGCTGCAGGC ATGGGCATAG GTTTGATGTA TTACGGCGTT
AGTGAGCCAT TGGGACATTT CGGGACTGCT TTTGCTGGAC CGACGCTAGA GAATGGCGTT
CGGACCGATT ACGCTCCGCT AGGAGGCGCA GCCGGCGACG CGGTTGCAGC ACAAAAACTG
GCGATGGCCG CCACGATTTA TCACTGGGCA CTCCACCCTT GGGCAATTTA CGCCATCATG
GCCTTAGGCT TGGCATTATT CTCTTTTAAC AAAGGGTTGC CGCTGACCAT TCGCTCGGTC
TTCTATCCTA TTTTAGGCGA GAGAGTATGG GGATGGCCTG GGCATATCAT TGATATTTTA
GCGATTTTGG CAACCTTGTT TGGTTTAGCG ACATCATTGG GGCTAGGGGC ATCTCAAGCC
GCATCAGGCC TACATTCGGT TTTTGGTTTA CCTTTAGGTG AAACCACTGA AATATTGTTG
GTACTAGGCA TAACGGGACT TGCATTGTTT TCAGTGGTAG CAGGCCTTGA TGCCGGCGTG
AAAAAACTGT CAGAAATCAA TATGATCTTA GCGGTGCTGC TGGTTATCTT TGTGCTTGTT
GTTGGGCCGA CAATAGCCAT CCTGACGGGC TTTTTTGACA ACTTGGTATC TTATATTCGT
TACTTACCTG AATTGGCGAA TCCAGTAGGG CGTGAGGATA CGGGTTTCGC AACGGGATGG
ACTGCCTTTT ACTGGGCGTG GTGGATTTCC TGGAGTCCTT TTGTGGGGAT GTTTATCGCA
CGGGTTTCTC GAGGCCGTAC GGTTCGCGAG TTCATTATTT CAGTACTGCT TGTGCCATCA
GTTGCCTGTG TATTTTGGAT GACAGTGTTC GGCGGAACTG CTATTCAGCA GGTTGTTGTT
GATGGTTATC AAGCGGCGGT AAACGCTGAC CTACCGTTAC AATTGTTTGC TGTACTTGAG
GGGCTTCCTT TAGCCAATAT CACCTCGTTT GTGGCCATTG TGTTAGTCAT CGTGTTTTTT
GTGACATCAT CCGACTCTGG CTCTTTGGTG ATTGATGTTA TCTCGGCTGG TGGCAAGGTA
GAAGCGCCGA CACCTCAGCG CGTATTTTGG TGTGTGTTTG AAGGTTTAGT CGCCGTTTCA
CTGATACTTG GTGGCGGACT CATTGCACTT CAAGCGATGG CGGTATCCAC GGGATTCCCG
TTCACCATTG TGTTGCTCAT TGCGGCATTC TCTATGGTCA AAGGCTTGAT GTCTGAACCA
AGATAA
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| Protein sequence | MKENKDPMIP DGEVNPIDTD YQVGQDNIVV SVGPFGLDIH NRVFAVSGVM IIAFVALTLL
FQAEAEPFFG NIRNWLTGNL DGFFMGAANI FVILCLVLVI SPLGRVRLGG TEAKPDYSYL
GWFSMLFAAG MGIGLMYYGV SEPLGHFGTA FAGPTLENGV RTDYAPLGGA AGDAVAAQKL
AMAATIYHWA LHPWAIYAIM ALGLALFSFN KGLPLTIRSV FYPILGERVW GWPGHIIDIL
AILATLFGLA TSLGLGASQA ASGLHSVFGL PLGETTEILL VLGITGLALF SVVAGLDAGV
KKLSEINMIL AVLLVIFVLV VGPTIAILTG FFDNLVSYIR YLPELANPVG REDTGFATGW
TAFYWAWWIS WSPFVGMFIA RVSRGRTVRE FIISVLLVPS VACVFWMTVF GGTAIQQVVV
DGYQAAVNAD LPLQLFAVLE GLPLANITSF VAIVLVIVFF VTSSDSGSLV IDVISAGGKV
EAPTPQRVFW CVFEGLVAVS LILGGGLIAL QAMAVSTGFP FTIVLLIAAF SMVKGLMSEP
R
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