Gene Patl_2504 details

Gene Information

• Locus tag: Patl_2504
• ID: 4174258
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 3036427
• End bp: 3038313
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638055520
• Product: cyclic nucleotide-binding protein
• Protein accession: YP_662074
• Protein GI: 109898819
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCACTG AACAAGTTGA AGTTACCGAC TTCTTGCAAC GACATAAACC GTTTTCTGAC 
TTAGCGGCGC CTGAGTTATC TCATGTGGCG TCTGGGGTAG AAATCGCCTA TTACAAAGCA 
GGCTCACCCA TTCTCACCTT TGGCCAAGAC AACACGCATT GGTTTGTGAT CAGAAGCGGT 
GCTGTTGAGG TGTTCCGTCG TGACGGCGAG TTATACAACC GTTTAGGTGA AGGAAACTTT 
TTTGGCGAAT TGGCCCTAAT GCGCAACCGC CCGGTGCGTT TTCCTGTCGT TGCCCTTGAA 
GATACCTTGG TTTACCTCAT AGACGCTGAT ACGTTTAATA ATCTATTCGA CAACGATGAG 
CAGTTTGCTG ACTTCGTAGA AGTTGAAGAT CGCAGCCGAT TACGTGAATC CAGCCCAGAT 
AAAAAAGACA ATAATGCGTT GTTAACGGTC AAGGTGGAAA AGCTCATCGA GCAATTGCCG 
CTGATCTTGC CACCGCATAC CAGTGTGCAA GATGCTGCAC TGCGCATGAC CGAAGAGGGG 
GTCTCCTCTC TACTCATTTC AAATGAGTAC CTAAACGATG ATACAAGTTC AGATGACGAG 
CCGGTCATTG GGATCGTTAC TGATGTGGAT ATTCGAAGCC GACTTGTGGC TAACGGACTT 
GATTTATCCA CTCCGGTGAC GGACATCATG ACGACGCAAC TCACCATAGT GCAAAGCAAC 
CAATACGTGT TTGAAGCCAT GATGCTGATG TTAAAACACA AGGTGACGCA CTTACCTGTA 
CTCAGAAAAT CGAAACCCAT TGGCTTAATA AGCCATCAAG ATATACTGCG TTACGAGTCA 
CAAAACAGTT TGTTCGTGGT CAAAAGTATT TTCAATGCGC AAAACGTTGA TGAACTCGCA 
GCACTTAAGG ATGAAGTGCA AACATGCTTT TCACGCATGG TAGATGAAGA TGCAAACTCG 
CAAATGATTG GCAGTGCGAT GGCGGTTATC GGCCGCAGTT TTAAGCAGCG CCTACTGGAG 
TTAGCGGAAG AAGAGTTCGG CCCGCCGCCG ATACCTTATT GTTTTCTCGC CCTTGGCTCT 
ATGGCCCGTG ACGAACAGCT CATAGTAACA GACCAAGACA ATGCCTTGGT GCTCGATAAC 
CGCTTTGAGC CCAAATTGCA TGACGCTTAC TTTAATGATT TAGCCAACTT TGTGTGTGAC 
GGCTTAGACC GCTGTGGGTA TACCTATTGC AAAGGCGGGA TTATGGCAAC TAACAAAAAA 
TGGCGTCAAC CATTAAAAAT ATGGGAGCAA TATTTCACTC AATGGATAGA TAATCCAACA 
CCCGAAACAC TTTTACACAG TGCAATATTT TTCGATTTAG ACGGGGTGTG GGGGAAAAAG 
GTATGGGCTG ACGCACTAAA TAGACTCATT CGTAAAAAAG CCTTTAAAAA TTCCCGCTTT 
CTAGCATGTA TGGCGCGAAA CGCATTGCTG CGTACGCCGC CTTTAGGGTT CTTTAAAGAC 
TTTGTGATGG AAACGGATGG ACGGCAAACC AACTCTATTA ATATGAAGCG CAGGGGGACA 
GCCCCCATTG CCGACTTAAT CCGGGTGCAT GCTTTGTCGG TCGGGGCTGA GGGACGTAAC 
AGCTTTTCAC GGCTCAATGG TGTGATTGAT GCCAAAATTC TGCCCCCAGG CCGCGGGGTC 
GACTTACGTG ACGCACTTGA GTTTATTGCT ATGGTACGCA TTCGCCACCA AGCATTTGAT 
TTGGAAATGA AACGTGTCCC TGATAATGAC ATTGAGCCAG AGTATTTGTC CGATTTTGAA 
CGTAAAAACC TGCGAGACGC GTTTCAAATT CTCAGCGATG CGCAAAAATA CATGAAGTAT 
CGGTATCAAC CTGGTCGTCA CTTGTAA 

 

Protein sequence

MATEQVEVTD FLQRHKPFSD LAAPELSHVA SGVEIAYYKA GSPILTFGQD NTHWFVIRSG 
AVEVFRRDGE LYNRLGEGNF FGELALMRNR PVRFPVVALE DTLVYLIDAD TFNNLFDNDE 
QFADFVEVED RSRLRESSPD KKDNNALLTV KVEKLIEQLP LILPPHTSVQ DAALRMTEEG 
VSSLLISNEY LNDDTSSDDE PVIGIVTDVD IRSRLVANGL DLSTPVTDIM TTQLTIVQSN 
QYVFEAMMLM LKHKVTHLPV LRKSKPIGLI SHQDILRYES QNSLFVVKSI FNAQNVDELA 
ALKDEVQTCF SRMVDEDANS QMIGSAMAVI GRSFKQRLLE LAEEEFGPPP IPYCFLALGS 
MARDEQLIVT DQDNALVLDN RFEPKLHDAY FNDLANFVCD GLDRCGYTYC KGGIMATNKK 
WRQPLKIWEQ YFTQWIDNPT PETLLHSAIF FDLDGVWGKK VWADALNRLI RKKAFKNSRF 
LACMARNALL RTPPLGFFKD FVMETDGRQT NSINMKRRGT APIADLIRVH ALSVGAEGRN 
SFSRLNGVID AKILPPGRGV DLRDALEFIA MVRIRHQAFD LEMKRVPDND IEPEYLSDFE 
RKNLRDAFQI LSDAQKYMKY RYQPGRHL