| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2501 |
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| Symbol | |
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| ID | 4174255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3033865 |
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| End bp | 3034608 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055517 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_662071 |
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| Protein GI | 109898816 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAACCA AAGTTGCCTT TATTACCGGT AGTGCCAAGC GTATAGGTGC ATCTACCGCC
ACCTACCTAC ATAACAAAGG GTTTAACATT GTGCTGCATT GCCATCACTC TGTATCCGAA
GCCGAGACCT TACTATTCAA TCTTAACAGT CAAAGGGAAC ATTCCGCGCG TTTAGTGGTT
GCTAACCTGT GCGAAATCGA CAACTTAGGT TTACTAGCAG AGCAAGTGGT TGGCGCTTTT
GGGCGCTTAG ATGTGCTAGT CAATAATGCG TCTTCGTTTT ACCCTACGCC CGTGGGTGAT
ATCACGCAAA GCCACTGGCA TGATTTATTT GGCAGTAATG TACAAGCGCC GTTGTTTTTA
GCACAGCATC TAGCTGGGAA TTTGACCGTT AATAAAGGAG TCATTATTAA CATGGTTGAT
ATTCATGCCG ATAGGCCACT TCAACAGCAC ACTGTTTATA GCATGGCAAA GTCAGCACTG
GTCACTATGA CCAAGTCATT GGCCATTGAG TTAGCACCGG ACATACGCGT TAACGCTGTT
GCCCCTGGCG CAATTCTATG GCCCGAACAA GCGCTATCTG ATGCTGACAA AAAACAGGTG
TTGCAACAGA TCCCTGCTAA AACCTTAGGC ACACCAGAAG ATATTGCTCA GGCTATCCAT
TATTTATGTG AAGCCAAATA TGTGACAGGC CAGATCATTG CCGTGGATGG TGGGCGCAGT
GTCGTGTCGA GCCATAAAGT TTGA
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| Protein sequence | MSTKVAFITG SAKRIGASTA TYLHNKGFNI VLHCHHSVSE AETLLFNLNS QREHSARLVV
ANLCEIDNLG LLAEQVVGAF GRLDVLVNNA SSFYPTPVGD ITQSHWHDLF GSNVQAPLFL
AQHLAGNLTV NKGVIINMVD IHADRPLQQH TVYSMAKSAL VTMTKSLAIE LAPDIRVNAV
APGAILWPEQ ALSDADKKQV LQQIPAKTLG TPEDIAQAIH YLCEAKYVTG QIIAVDGGRS
VVSSHKV
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