| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2472 |
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| Symbol | |
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| ID | 4174226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 3004288 |
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| End bp | 3004944 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055488 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_662042 |
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| Protein GI | 109898787 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTAAATA AGCCCAAAGG TGTATTGTTC GATTTAGACG GTACGTTATT AGACACTGCA
CGAGATTTAG GCAATGCCCT AAACTGGGTT TTACACCAAC ATAAAATGCC CTCATGCGCG
TTCAGCGTAT ATCGTAATAT TGCTTCTGAT GGCTCTCAAG GATTACTCGA AATAGGCTTT
GGCGATAGGC TCGCGGATTT TGACGTCGAA GCACTTAGGG CCCTTTTTCT TGAAAGATAT
GAACAAGAGA TATGTGTAGA TACCGTGTCG TTTGATGGCA TTAGAGAGCT ACTTGCACGT
TTAGATAAGG ATAATATCCC TTGGGGCATA GTGACCAATA AACCACAATG GCTCACCGAG
CTTTTGTTAC CTCATTTTGA CGAGTTTGCC CAGTGCCAAG TGGTCATCAG TGGCGACACG
TTAGAAAAAC GCAAACCCCA CCCTTTGCCC CTGATACATG CTGCAAACGC GATGAACATT
AATCCTACAG AGTGTTGGTA TATCGGCGAT GCTAAACGTG ACATAGATGC CGCAAAAGCT
GCGAACATGT TTAGTGTGGT GGCAAACTAT GGATACATAG GCCCAGAGCA TAGATCAGAC
AGCTGGAATG CGGATCTGTA CATTGATCAA CCACAGGCAA TCCTCGCCCA CCTATAA
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| Protein sequence | MLNKPKGVLF DLDGTLLDTA RDLGNALNWV LHQHKMPSCA FSVYRNIASD GSQGLLEIGF
GDRLADFDVE ALRALFLERY EQEICVDTVS FDGIRELLAR LDKDNIPWGI VTNKPQWLTE
LLLPHFDEFA QCQVVISGDT LEKRKPHPLP LIHAANAMNI NPTECWYIGD AKRDIDAAKA
ANMFSVVANY GYIGPEHRSD SWNADLYIDQ PQAILAHL
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