| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2466 |
|---|
| Symbol | rpsA |
|---|
| ID | 4174220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2995517 |
|---|
| End bp | 2997190 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638055482 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_662036 |
|---|
| Protein GI | 162382312 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000206931 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA ATTTTGCTCA ACTATTTGAA GAAAGCTTAA AAGAAATCGA AACCCGTCCA
GGTGCAATTG TTAAAGGTAC TATCGTATCT ATCGACAAAG ACATCGTACT TGTAGACGCA
GGTTTGAAAT CTGAAAGCGC GATCCCAGCT GAACAATTCC GTAATGCTGA CGGTACACTA
GATGTTGAAA TCGGAGACCA AGTTGACGTT GCTCTAGACG CAATTGAAGA CGGTTTCGGT
GAAACAATCT TGTCTCGCGA AAAAGCAAAA CGTCACGAAG CCTGGGTTGA GCTAGAAAAA
GCTTACGATG ACAAAGAAAC GATTAAAGGT GTTATCAATG GTAAGGTCAA AGGTGGCTTT
ACGGTTGAAG TGAATACAGT TCGTGCATTC TTACCTGGTT CATTGGTTGA CGTACGCCCA
GTACGCGACA CGACTCATCT TGAAGGTAAA GAACTGGAAT TCAAAGTTAT CAAGCTTGAT
GCTAAGCGTA ACAACGTGGT TGTTTCACGT CGTGCGGTTA TCGAAGCAGA AAGCAGCGCA
GAACGTGATC AACTTCTTGC TAACCTTGAA GAAGGCCATG AAGTTAAAGG TATCGTTAAG
AACCTTACTG ATTACGGCGC GTTCGTTGAT CTTGGTGGTG TTGATGGTCT TCTACACATT
ACTGATATGG CTTGGAAACG CGTTAAGCAC CCAAGTGAGA TCGTTAATGT TGGTGATGAA
ATCAACGTTA AAGTACTTAA GTTCGACAAA GAAAAATCTC GTGTTTCATT AGGTATGAAA
CAAATGGGCA ACGATCCTTG GCAAGAAATT GCAGAGCGTT ACCCTGAAGG TTCTAAATTG
AGCGGTGCAG TCACTAACCT AACTGACTAC GGTTGTTTCG TTGAAATCGA AGACGGCGTT
GAAGGTCTAG TTCACGTATC TGAAATGGAT TGGACTAACA AAAACATTCA CCCATCTAAA
GTGGTTAACT TGGGTGACAC TGTTGAAGTT ATGGTTCTTG AAATTGACGA AGAGCGTCGT
CGTATTTCTC TTGGCCTTAA GCAATGTAAA CCTAACCCAT GGGAAGAGTT TGCTAAGGCA
CAGAGCAAAG GCGATAAAGT TAGTGGTAAG ATCAAGTCTA TCACCGACTT CGGTATCTTT
ATCGGTCTCG ACGGCGGCAT TGACGGCTTA GTACATTTGT CTGACATTTC TTGGAACAAG
ACTGGCGAAG ACGCTGTTCG TGAATACAAG AAAGGCGACG AAATCTCTGC TGTTGTTCTA
CAAGTTGACC CAGAGCGTGA GCGTATCTCT CTAGGTGTTA AACAGATTGA AGAAGATCCG
TTTAACCAAT ACCTGACGGA TACTAAGAAA GGTACTATCG TTGTTGGTAC TGTGACTGAA
GTTGACGCCA AAGGCGTAAC TGTTAAACTT GCAGAAGAAG TTGAAGGTTA CATCCGCGCA
ACTGATTTAG CTCGCGAACG TGTTGAAGAT GCATCTGAAG TAGCATCTGT AGGCGACGAA
ATCGAAGCTA AGTTCATGGG CGTTGACCGT AAGAACCGCA TCGTTAACTT GTCTGTTAAA
GCAAAAGACC AAGCAGACGA GAAAGAAGCA CTTGACAAAG TTAACCAACA AGAAGAAGTT
GGTTTTGCTA ACGCATTTGC TGAAGCCTTT AAAGCGGCGA AGAGCGAAGA TTAA
|
|---|
| Protein sequence | MTENFAQLFE ESLKEIETRP GAIVKGTIVS IDKDIVLVDA GLKSESAIPA EQFRNADGTL
DVEIGDQVDV ALDAIEDGFG ETILSREKAK RHEAWVELEK AYDDKETIKG VINGKVKGGF
TVEVNTVRAF LPGSLVDVRP VRDTTHLEGK ELEFKVIKLD AKRNNVVVSR RAVIEAESSA
ERDQLLANLE EGHEVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKFDK EKSRVSLGMK QMGNDPWQEI AERYPEGSKL SGAVTNLTDY GCFVEIEDGV
EGLVHVSEMD WTNKNIHPSK VVNLGDTVEV MVLEIDEERR RISLGLKQCK PNPWEEFAKA
QSKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNK TGEDAVREYK KGDEISAVVL
QVDPERERIS LGVKQIEEDP FNQYLTDTKK GTIVVGTVTE VDAKGVTVKL AEEVEGYIRA
TDLARERVED ASEVASVGDE IEAKFMGVDR KNRIVNLSVK AKDQADEKEA LDKVNQQEEV
GFANAFAEAF KAAKSED
|
|---|
| |