| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2426 |
|---|
| Symbol | |
|---|
| ID | 4174175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2953928 |
|---|
| End bp | 2954857 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638055437 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_661996 |
|---|
| Protein GI | 109898741 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1975] Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family |
|---|
| TIGRFAM ID | [TIGR02964] xanthine dehydrogenase accessory protein XdhC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCA ATAAATGGTT TGACGCATTG CATCAATGCC AAGCGCAAGG CAAAGCCTAC
GTATTGGTAA CAGTCCTTGG CGCTGCGGGC TCGACTCCTC GCGGCAACGG CACCAAAATG
ATTGTGACCG GGGATGAAAC TTTCGACACG ATAGGCGGCG GGCACTTAGA ATTTGCCGCT
ACGGAACAAG CCAGAGGTCT ACTCGCGAAT AACGAGCAAA CACAGCACAT TGAGCACTAT
CCGCTTTCCA GTAAATTGGG GCAATGCTGC GGCGGTGCGG TCAACGTATT GTTTGAAGTG
ATGATAGAAC AATGCCAAAC CGTGCAAATT TACGGCGCGG GTCATGTGGC CCATGCGTTA
ATTCCGTTAC TAGCGCAGCT GCCTTTGCAA ATACAGTGGA TTGATCAACG TGAAGCATTA
TTTCCCAAGA GCAGCGCGGG ACAAAGACAC CCGAATTACG ATTTTGCCAA TTTAGATATC
ATAGTGAGCG ATGAGCCAAC TGAGCATATC GCTCGGGCAC CTGCCAATAG TTGGTTGGTG
GTTATGACCC ACAATCATCA ATTAGATTAC GAATTGGTTG AGGTGGCGCT TAAACGCCCT
GACCTGCCTT ATATCGGTAT GATAGGCTCT AACACCAAAG CGAAACGATT TGTCACACGT
ATCGCCGCGC GCATGCCTGA TGTAACTCAG CCCGAGCGCT TGGTCAGCCC AATTGGGGTA
TTAGACATTC CAGGTAAACG CCCCATTGAA GTGGCGGTGT CTATTGCGGG TCAAATCATA
CAACGCCTAA ACAGTGATGC ACTTGAGCAA CAACCCAGTG AGGGCGCGAG TACGCAAGAA
AACCAACTTA ACACCAACCA AGCGCTTAAA ATGCGACAAA AGCAAGTGAA CGCGTGGCGC
GCCTCTAAGA AATTAAAAGA CTCATTATGA
|
|---|
| Protein sequence | MNTNKWFDAL HQCQAQGKAY VLVTVLGAAG STPRGNGTKM IVTGDETFDT IGGGHLEFAA
TEQARGLLAN NEQTQHIEHY PLSSKLGQCC GGAVNVLFEV MIEQCQTVQI YGAGHVAHAL
IPLLAQLPLQ IQWIDQREAL FPKSSAGQRH PNYDFANLDI IVSDEPTEHI ARAPANSWLV
VMTHNHQLDY ELVEVALKRP DLPYIGMIGS NTKAKRFVTR IAARMPDVTQ PERLVSPIGV
LDIPGKRPIE VAVSIAGQII QRLNSDALEQ QPSEGASTQE NQLNTNQALK MRQKQVNAWR
ASKKLKDSL
|
|---|
| |