Gene Patl_2423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2423 
Symbol 
ID4174172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp2949073 
End bp2949717 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content41% 
IMG OID638055434 
ProductTetR family transcriptional regulator 
Protein accessionYP_661993 
Protein GI109898738 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACT CATTATCAAA AAAAGATGAC AGCATTGGCG CAATTAATCG CGCAAAAATT 
TTAACCGCAG CTGAAAAAGA GTTTGCAATT CATGGGTTTA AAGGAACCAG AGTGCAAAAT 
ATAGCGGATA GAGCGGAATT GCCGAAGACT AATATTTTAT ACTATTTCAA ATCCAAAGAC 
GGTTTGTATC TTGCGCTGCT ACAAGAAATT CTAAGTTTGT GGAACAGCAG TTTCGACAAC 
GCTAAAGCGC AAGACGATCC TGCTCAAGTG TTGGCTGCGT ATATAGCAGA CAAGATGGAA 
ATCTCTCGTT CTCGGCCTGA TGCATCGAAA ATCTTTGCAC TGGAAATCAT CAACGGTGCA 
CCAAACTTGA GCAGCTTTTT TAAAGACCAA CATTCCAATT GGATGAATTC TCGAGTGGCA 
GTAATACGCC AATGGATCGA GTTAGGAAAA TTACCAGACA TTGATCCTCA TTATTTGTTG 
TTCAATATTT GGGCGAGCAG TCAACACTAT GCTGATTTTT CTGCTCAGAT CACTGAACTA 
ATGGGGCACG AGATGGATCA AAGCGAATTC GCAAACGCCA CTAAGAGTTT AATTAAGCTC 
ATTTTGCAAG GCTGCGGCCT AACAGTACCG AACGAATATA AATGA
 
Protein sequence
MSDSLSKKDD SIGAINRAKI LTAAEKEFAI HGFKGTRVQN IADRAELPKT NILYYFKSKD 
GLYLALLQEI LSLWNSSFDN AKAQDDPAQV LAAYIADKME ISRSRPDASK IFALEIINGA 
PNLSSFFKDQ HSNWMNSRVA VIRQWIELGK LPDIDPHYLL FNIWASSQHY ADFSAQITEL 
MGHEMDQSEF ANATKSLIKL ILQGCGLTVP NEYK