| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2422 |
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| Symbol | |
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| ID | 4174171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2948154 |
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| End bp | 2949059 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055433 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_661992 |
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| Protein GI | 109898737 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | [TIGR03212] putative urate catabolism protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCACG CATATCCACG AGATTTAATC GGTTATGGCG ATACTCCGCC CAACCCAAAC
TGGCCCGGTA AGGCAAAGAT CGCGCTACAG TTTGTACTCA ATTATGAAGA AGGTGGAGAA
AACTGTGTAC TTCATGGTGA TGAAGCATCT GAAGTTTTTC TTTCTGAGAT TATTGGCGCA
CAGGCATACA AAGACAGGCA CCTGAGCATG GAGTCCATGT ATGAATACGG TAGCCGTGCA
GGTTTTTGGC GATTACACCG CTTGTTTGAA CGCTTAAATG TGCCGATCAC AGTATTTGGT
GTCACGATGG CGCTGCAACG AAACCCAGAA GCGGTCGCTG CAATGAAAGA CGCCAAATGG
GAGATTGCTA GCCATGGGAT GCGCTGGATC CACTATCAAG ATATGCCTGA AGCCCAAGAG
CGTAAAATGA TTGATGCCTC TATGCAGCTT CATCAAGCCA TTACTGGTTC AAAACCCGTG
GGTTGGTACA CAGGCAGAAC CAGCCCGAAT ACCTTAAAGC TCATCTCTGA GCGTGATGAT
CTGTTATATT GCGCCGACTC TTACGCGGAC GATCTTCCTT ATTACGACAC CAACTATCCA
AAACCGTTGT TGATTGTGCC TTACACGCTA GATACCAACG ACATGCGTTT TGCCAGTGCA
CAAGGGTTCA ATAGTGGTGA GCAGTTCTTT CAATATCTTA AAGATGCGTT TGACGTGCTA
TACGAAGAGG GCAATTACGC GCCTAAAATG CTGTCGATTG GTTTGCATTG CAGGATCATA
GGTAGACCTG CCCGTATGGC TGCGCTGCAA CGTTTTATCG AATACGTACA AAGTCATGAC
CAAGTATGGC TGTGTACTAG ACAAGAAATA GCGCAACATT GGAAAGACAA CTTTCCCTAC
AAGTAA
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| Protein sequence | MNHAYPRDLI GYGDTPPNPN WPGKAKIALQ FVLNYEEGGE NCVLHGDEAS EVFLSEIIGA
QAYKDRHLSM ESMYEYGSRA GFWRLHRLFE RLNVPITVFG VTMALQRNPE AVAAMKDAKW
EIASHGMRWI HYQDMPEAQE RKMIDASMQL HQAITGSKPV GWYTGRTSPN TLKLISERDD
LLYCADSYAD DLPYYDTNYP KPLLIVPYTL DTNDMRFASA QGFNSGEQFF QYLKDAFDVL
YEEGNYAPKM LSIGLHCRII GRPARMAALQ RFIEYVQSHD QVWLCTRQEI AQHWKDNFPY
K
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