| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2421 |
|---|
| Symbol | |
|---|
| ID | 4174170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2946668 |
|---|
| End bp | 2947999 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638055432 |
|---|
| Product | xanthine/uracil/vitamin C permease |
|---|
| Protein accession | YP_661991 |
|---|
| Protein GI | 109898736 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2252] Permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACG CAGTATTCGA AAAGCTTTTT AAGCTGCAAG CCAACGGCAC CAATATTAAA
ACTGAATTTA TCGCCGGCCT AACCACTTTT GCGGCTATGT CTTATGTATT GGTGGTTAAC
CCGAGCATTC TATCCGCTGG CGGTATGCCG GTTGTCGGCT TGATAACCGT CACAGCACTT
GCCGCTTGCT TGGGCACCTT GCTAATGGCT TTTATGACCA ACTACCCCAT CGCCATGGCG
CCCGGAATGG GCTTGAATGC ATTCTTTGCC TTTACAATAT GTTTAACTAG GGACATTCAT
TGGGAAGCAG CTCTGGGTAT TGTGTTTTGG AACGGTATTC TGTTTTTGCT GTTGTCGGTG
ACTGGGGTGC GAACCAAAAT AGCCGATGCC ATCCCCGCTG CGCTCAAAAT AGGGGTGCAA
TGTGGTATTG GTCTATTCAT CGCTTTTATT GGCTTAAAAA ACGCTGGCAT TGTCGTTGAC
CACCCTGCCA CGTTCCTAAC GATTGGCGAT CTATCAGAGC CTGCCACTAT GCTCGCGGTC
GCCGGCATTT TGCTAACCAT TGTACTCTTT ATTAAAAAGG TCACTGGAGC GATATTAATT
TCTGTATTGG TGCTGACCTT GATTGGCGCA TTTATACCGA CTGCAGACGG TTACCTTACT
CAGCACACTG ACTCATTTGT TGGCATGCCC GATAGCATAA GCTCTACGTT TTTCGCCATG
GATCTCATGT ATCCCATAGA AAACATCGCA ACCACGTGGG ACCTTATCTT CGCCCTGCTG
TTCGTGAACA TGTTTGACAC TATCGGTACC CTAATTGGCG TTTCACGCCG GGCTAACTTG
TTAGACAAAG ACGGGCGTTT ACCCAAAATA GGCCCTGCGA TGACCGCAGA TGCAACCGCA
AGTGTGGTCG GTGCTGCCCT TGGTACATCC CCCGTGACAT CCTATGTGGA ATCTGCTGCG
GGGGTATCTT CTGGTGGCCG CACTGGCCTT ACCGGTGTGT TCGTAGCGTT ATGTTTCATG
CTTGCCTTGT TCTTTACCCC TTTGATGAAA GTGATCCCGC TTATGGCGAC CACGCCGGCG
CTGATCATGG TGGGTATCTT AATGATGGAC TCTTTCAGGC AGTTAGACTT TGATGATTTA
ACGGCGCTTG CCACAGCCAC TGTTGCGCTA TTGGTTATGC CACTGACATT CAGTATCAGC
GAAGGCATAG CCATGGGCTT TATCACTTAT GTGGGTATCA TGGTCGGCAC AGGCAAGTAC
AAACAGGTCA CATGGATAAC CTATGCCATG GCTGCGGTGT TTATTCTGCG TTACGTCCTA
GATTTGAAAT AA
|
|---|
| Protein sequence | MFNAVFEKLF KLQANGTNIK TEFIAGLTTF AAMSYVLVVN PSILSAGGMP VVGLITVTAL
AACLGTLLMA FMTNYPIAMA PGMGLNAFFA FTICLTRDIH WEAALGIVFW NGILFLLLSV
TGVRTKIADA IPAALKIGVQ CGIGLFIAFI GLKNAGIVVD HPATFLTIGD LSEPATMLAV
AGILLTIVLF IKKVTGAILI SVLVLTLIGA FIPTADGYLT QHTDSFVGMP DSISSTFFAM
DLMYPIENIA TTWDLIFALL FVNMFDTIGT LIGVSRRANL LDKDGRLPKI GPAMTADATA
SVVGAALGTS PVTSYVESAA GVSSGGRTGL TGVFVALCFM LALFFTPLMK VIPLMATTPA
LIMVGILMMD SFRQLDFDDL TALATATVAL LVMPLTFSIS EGIAMGFITY VGIMVGTGKY
KQVTWITYAM AAVFILRYVL DLK
|
|---|
| |