| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2394 |
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| Symbol | |
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| ID | 4174142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2913006 |
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| End bp | 2914469 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638055405 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_661964 |
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| Protein GI | 109898709 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTGA CTATTTTAGT GCACCCTCTA CGTATCAAGG TATTGGGTCA AGTCAAAAAC
AAAGTGCTGC TTACAGCTTG CTTGCTGTTA CCCCTAGTAT TTGCATCATC AATGAGTTGG
GGAATGTCTT TATCCCAAGC CATTTTACAA GCCCAGCAGC AAGACCCATG GTTAGACGGT
AGCCAACAAA AAGAATACGC GTTGCGTGCT CAAGGGCTGG CCAGTGATTC TTTACCTAAT
CCTGAACTGT CATTTGGTTT ATTGAACGTC CCTAGCGACG GCTTTGCGCT AGATCAAGAG
CCCATGACCC AGTTTAAGGT GGGGGTGAAG CAATCGTTCA CCCGTGGTCA AAGTCGCCGT
ATTAGCCGCC AGCGTTACCA ACAACTTGCT GCTGTTCAAC CTTTTCTGCG TGACGATCGT
TTGAAGCAAG TCGCATTAAC CGTGACGCTG ATGTGGTTAG ACTTATACCA AGCAAATCAA
GAGATTGCAC TGGCTTTGCA GTTGCGAGAG ACATTGCAGC AACTGATTGA TATTAGTAAA
GCGAATTACG CGACCACGTT TGCCAGTCGC CGTAACAGAG CCACCCAAAA TGACGTGCTG
ATGGCGCAAC TCACCTTGGC CAAAGTGGAC GATAGAATTG TTGAAATCAA TAGCAGCAAA
CGTTCAACAC AAGCCAAGTT GTGCCAATGG TTAGCTCGGG AAGATGGATA TGATGATGAC
AAACCCACAA TTGCCCATGA CGAAGTGCCG CCGTCTTTGC AATTACAAGC CTGTCATTTA
GATGAGGCGG CACATCAGCA CCTGCCATTA TTTTCTGCAG TGCCTAGCTT CGTTGTACAC
GAACCCTTAA ACGCACAAAC GACGCTGAAC ACATTACAGG CGGTCGTATC ACAGCATCCC
CGAGCTAAAG CCGCGCAGCA ATCTATTAGC GCTAGCGAAG GGGACGTTAA GTTAGCAGCA
GCACAATATG CTCCGCTGTG GGGGGTAAAT CTAGGTTACG CCTATCGGCA AGACGACGCC
TTCAATCAAC GTCGCGCCGA TTTTTGGTCA GTAAGTGTGA GCATGGACAT GCCGCTTTTT
TCTCGTGCTA AACAAGATAA TGCTTTGGCT GCTGCACATC ATCAAAAAGA AGCGATGCGA
ACAGAGTATC GCTTGGTTAT GCGTGAAATG GTGGGGCAAT TAAATGACTT AGCTGTGCAA
TACCGCCAAT ACCAAAAGCG TGTAGCGCAT TACGAGGGGG TTATTCTGCC GAATATTGCT
GAGCAAAAAG AGGTTAGCGT GGCGAATTTA AGTCACGACT ACGGCAGTTT AGAACTGGCA
TCAGAGGTAT TGATCACAGC TAACCAGGCG GAGTTTGAAC GTCTTGCCTT AGTGGTAAAG
CAGCAAAAAG TGCGCGCTAA AATTAACTAT TTTCTACCTG GGCAGTCACT GCTGTCTTCG
CATGATCAGG AAAATCGCCC ATGA
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| Protein sequence | MTLTILVHPL RIKVLGQVKN KVLLTACLLL PLVFASSMSW GMSLSQAILQ AQQQDPWLDG
SQQKEYALRA QGLASDSLPN PELSFGLLNV PSDGFALDQE PMTQFKVGVK QSFTRGQSRR
ISRQRYQQLA AVQPFLRDDR LKQVALTVTL MWLDLYQANQ EIALALQLRE TLQQLIDISK
ANYATTFASR RNRATQNDVL MAQLTLAKVD DRIVEINSSK RSTQAKLCQW LAREDGYDDD
KPTIAHDEVP PSLQLQACHL DEAAHQHLPL FSAVPSFVVH EPLNAQTTLN TLQAVVSQHP
RAKAAQQSIS ASEGDVKLAA AQYAPLWGVN LGYAYRQDDA FNQRRADFWS VSVSMDMPLF
SRAKQDNALA AAHHQKEAMR TEYRLVMREM VGQLNDLAVQ YRQYQKRVAH YEGVILPNIA
EQKEVSVANL SHDYGSLELA SEVLITANQA EFERLALVVK QQKVRAKINY FLPGQSLLSS
HDQENRP
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