| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2392 |
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| Symbol | |
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| ID | 4174140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2908298 |
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| End bp | 2911435 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638055403 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_661962 |
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| Protein GI | 109898707 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGTGC ATGTCATTCG TTGGTCCGTG AACAATCGGC TATTAGTGCT GCTGTTAACA
GGGATAATGG TTGGCATGGG GCTTTTTAGT CTCAAGCATA CGCCTGTGGA TGCGATCCCT
GATTTATCTG ACGTGCAGGT CATTATTAAA ACCAGCTATC CCGGTCAAAC TCCTCAAGTA
GTGGAAGACC AAGTAACGTA TCCGCTCACT ACGGCCATGT TGTCTGTGCC TGGCGCAACA
ACCGTTCGTG GTTTTTCATT TTTTGGCGAC TCTTACGTAT ACGTCATTTT TAATGACGAT
ACCGACCCAT ATTGGGCCCG AACACGGGTG CTGGAATATT TGTCTCAGGT GAGCCCCAAT
TTGCCGTCGC AAGCCAAACC GCAATTGGGC CCTGATGCTA CAGGCGTGGG CTGGGTGTAT
ATATATGCCC TTAAGGACGA AAGCGGGCAA CATGATTTAA GCGAGCTGCG GGCATTACAA
GATTGGTTTT TAAAATTCGA ATTGCAAACC GTACCGGGTA TTTCCGAGGT CGCTGCTATT
GGCGGCATGA TTAAGCAGTA TCAGGTGGTG GTCGACCCGA ATAAACTGCG TGCTTACAAT
ATTCCGTTAA GCTTAATACA AACCGCGATA CAGCAAGGCA ATCAGGAAGT GGGGGCGTCA
GTGGTTGAGA TGGCCGAAGC TGAGTATTTG GTTTCAATTA ATGGTTATGT GCAACAACGT
GACGATCTTG CTCGCATTCC ACTTGGTGTT AACAAGCAGG GAGTACCTGT GTTGTTGCGC
GATGTGGCGA GTATTGCACT AGGCCCTCAG ATGCGCCGGG GCATTGCCGA GCTAAACGGT
GAAGGGGAAG TCGTTGGCGG TATCGCCGTT ATGCGTTTTG GCGAAAATGC GCAAAAGACC
ATTGAAGCCT TTAAAGCAAA ACTGGAGGTG CTTAAGCAAG GCCTACCTGC TGGTGTAGAG
GTGGTGCCTG TATACGACCG CTCAGAGTTG ATCAACAGCG CTGTCACGCA TTTATGGTCC
AAGCTGCTAG AAGAGTTGTT GATTGTGGGG CTAGTGTGCG CATTGTTTTT GTTTCATGTT
CGCTCATCTT TAGTGGCCAT TGTCAGTTTA CCCCTGGGGA TACTCGTGGC GTTTGTGATC
ATGTATTGGC AGGGCATTAA CGCCAACATT ATGTCTCTTG GAGGAATTGC TATCGCTATA
GGGGCGATGA CCGATGGGGC GATAGTGATG ATTGAGAACA TGCATAAACA TATGCAAGAC
ACACCACTGA CAGACGCCAA TCGGTGGGAT ATTGTGGCCA AGTCTGCCTC TGAGGTCGGG
CCCGCATTGT TTTTTAGCCT GTTAATTATC ACCGTCAGCT TTTTACCGGT TTTCATGCTT
GAAGCACAAG AAGGGCGAAT GTTTGCACCG TTGGCATTTA CCAAAACCTA CGCGATGGCA
GCCTCGGCCG GCTTAGCCAT CAGTGTGGTG CCTGTGCTGA TGGGGTATGT CATACGAGGA
AAAGTCATAA GTGAGCACAG AAACCCGATT AATCGCGGCT TGGTCGCCTT GTATATGCCC
GCACTAAAAA CCGTTTTGGG CTATCCAAAA ACAACCTTAG TGGCAGCGGG TATGATTACA
TTGGTTGGTT TTTATCCGCT TAAACACATT GGCTCTGAAT TTATGCCGCC TCTGGATGAA
GGGGATTTGA TGTATATGCC CAGCACGTAT ACCGGTATTT CTATCGGCAA AGCGCGAGAA
ATATTACAAC AAACTGACAA ACTTATACGC ACCGTACCAG AGGTAAAAAA CGTGTTTGGT
AAAATAGGCC GCGCAGACAC CGCCACTGAC CCTGCGCCGT TGACCATGAT TGAAACATTC
ATTCAGTTCA AACCTAAAAG CGAATGGCGC GAAGGCATGA TAAAAGACGA TATTCGCCAC
GCTCTGGATG ACGCATTGCA GCTTCCTGGG ATCACTAACG CTTGGGTGAT GCCGATTAAA
ACTCGCATAG ATATGCTAGC GACCGGTATT AAGACCCCTG TGGGCATCAA AGTTGCGGGT
GAGGACCTAG ACGTCATTCA ACGAATAGGG CGAGACATCG AGCGGTTATT AACGCCTATG
CAAGGCTCAG CATCGGTATA CGCCGAGCGG GCAGTGGGAG GGCGTTATAT CAAGCTTGAT
ATAGACAGAG AAGCCGCTGC CCGATATGGC TTGAGCATTC GCGCTATTCA ACAAGATGTA
TCAATGGCGA TAGGCGGCGT TAATGTGGGT GAGTCGGTAG AAGGCTTAGC GCGTTATCCT
ATCAATGTTC GCTACCCAGA GGCCTATCGA GATTCACCAG AGCAAATTAG TTTGCTGCCC
ATTGTGACAG CAGATGGGCA GCATATAACC TTAGGTGAGG TGGCTCGGGT TTATCTCGAC
GATGGTCCAG GGGCAATCAA AAGTGAGAAT GCTCGTCTTA ATGGCTGGAT ATTTATCGAT
ATCCAAGATA TCGATGTCAG CCACTACGTG GAAAATGGTC AGGCATTACT TGCACAGAAG
CTAGACTTAC CTGCTGGCTA CAGCGTCACG TGGGCCGGTC AATACGAATA CATTGAGCGT
GCAAAAGACA AGCTCACGTA TGTCGTACCG CTGACGTTGG CGATCATCAT TTTGTTGTTA
TATCTGAATT TCAAGCGCTT TGCCGAGGTT GCCATCATCT TAGGTACGTT ACCACTGGCG
ATGATAGGTG GTGTATGGCT ACTGTATTTA GCGCAATACA ATCTGTCTGT GGCGGTTGGC
GTCGGTTTTA TCGCGCTGGC GGGGGTGGCG GTTGAAATAG GCGTCATCAT GTTGGTGTAT
CTGAATCAGG CATATGCGCA ATTGCAAATA AATGCGGCTC GCGATGCCAA GCACATAACC
TTAACGGATC TACGAGAAAG TGTTATTCAC GGAGCGGGAT TAAGAGTGCG CCCTGTCATG
ATGACAGTGG CAACGATAGT GATAGGTTTG CTCCCTGTGA TGTATGCGAG TGGCACCGGG
TCTGAGGTGA TGAGTAGAAT AGCTGCCCCA ATGGTGGGTG GCATGGCAAG TGCTTTGATA
TTGAGTTTAC TGGTGGTGCC GGTCGTGTAT TTCTTGTGGC GCAAACAGGA CCTTGAAACG
TCACCACCGC GGGGCTGA
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| Protein sequence | MIVHVIRWSV NNRLLVLLLT GIMVGMGLFS LKHTPVDAIP DLSDVQVIIK TSYPGQTPQV
VEDQVTYPLT TAMLSVPGAT TVRGFSFFGD SYVYVIFNDD TDPYWARTRV LEYLSQVSPN
LPSQAKPQLG PDATGVGWVY IYALKDESGQ HDLSELRALQ DWFLKFELQT VPGISEVAAI
GGMIKQYQVV VDPNKLRAYN IPLSLIQTAI QQGNQEVGAS VVEMAEAEYL VSINGYVQQR
DDLARIPLGV NKQGVPVLLR DVASIALGPQ MRRGIAELNG EGEVVGGIAV MRFGENAQKT
IEAFKAKLEV LKQGLPAGVE VVPVYDRSEL INSAVTHLWS KLLEELLIVG LVCALFLFHV
RSSLVAIVSL PLGILVAFVI MYWQGINANI MSLGGIAIAI GAMTDGAIVM IENMHKHMQD
TPLTDANRWD IVAKSASEVG PALFFSLLII TVSFLPVFML EAQEGRMFAP LAFTKTYAMA
ASAGLAISVV PVLMGYVIRG KVISEHRNPI NRGLVALYMP ALKTVLGYPK TTLVAAGMIT
LVGFYPLKHI GSEFMPPLDE GDLMYMPSTY TGISIGKARE ILQQTDKLIR TVPEVKNVFG
KIGRADTATD PAPLTMIETF IQFKPKSEWR EGMIKDDIRH ALDDALQLPG ITNAWVMPIK
TRIDMLATGI KTPVGIKVAG EDLDVIQRIG RDIERLLTPM QGSASVYAER AVGGRYIKLD
IDREAAARYG LSIRAIQQDV SMAIGGVNVG ESVEGLARYP INVRYPEAYR DSPEQISLLP
IVTADGQHIT LGEVARVYLD DGPGAIKSEN ARLNGWIFID IQDIDVSHYV ENGQALLAQK
LDLPAGYSVT WAGQYEYIER AKDKLTYVVP LTLAIIILLL YLNFKRFAEV AIILGTLPLA
MIGGVWLLYL AQYNLSVAVG VGFIALAGVA VEIGVIMLVY LNQAYAQLQI NAARDAKHIT
LTDLRESVIH GAGLRVRPVM MTVATIVIGL LPVMYASGTG SEVMSRIAAP MVGGMASALI
LSLLVVPVVY FLWRKQDLET SPPRG
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