| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2389 |
|---|
| Symbol | |
|---|
| ID | 4174137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2903830 |
|---|
| End bp | 2905680 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055400 |
|---|
| Product | peptidase M61 |
|---|
| Protein accession | YP_661959 |
|---|
| Protein GI | 109898704 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCAAC ATTCTGCTGA TATCCACTAC ACCCTCAACG TTTCTTCTCT TGCCGGGCAT
ATGCTAGACG TCTCATTACA GATTAATATG CCCTCAAGTG ATGGTCATGA ACTGACGTTA
CCCGCTTGGA TACCCGGCAG TTACATGATC AGGGATTTCG CGAAAAATAT CGTTGAAATA
TCCGCTCAAG ACGCCCAAGG TCAGGCATTA TCGATACATA AACTAGATAA ACAAACTTGG
AAGCTGCCAG CAAACTCTGG CCCAATAACG GTAAATTACA GTGTTTACGC GTTTGATTTA
TCGGTACGCA GTGCTTACGT ATTTGACGAT TTTGCCTTTT TTAACGGCAC AAGTACTTTC
CTAGCGATCA AAGAGCACCG CGAAGCACCT GTGCTAGTGA CCCTAATCAG GCCTGAACAG
GCCCAATGTA AGCATTGGCG AGTGGCAACT ACCTTGCCCC TTGCTAGAGC CACCGAGCAT
CACGATTTCG GGGACTACTG CGCTGACAAT TACAACGACT TGATAGACCA TCCCATTTTA
ATGGGAAATT ACGATATCGT GCCTTTTGAC GTTGTTACCC CAGTCGCCAG CACCTCTTCA
CAACAAAGCG CTGAACATAT CTGTCACTTT GAGTTAATTC TGGCCGGCGG ACACCGCAGC
GATACCCAAC GCATGGCAGC AGACTTGCGT AAACTCTGCG CCCATCATTT CACCTTATTC
GGCGATACGC CGCCCGTTGA GCGCTATCTG TTTATCACCA TGCTAACAGG CAAAGATTTT
GGCGGCCTTG AGCATATGTC TTCTACAGCA CTGCTTTACA GCAGAGATGA TTTACCCAGT
ACCGCCCAAG CAGATCACAT GCCTGATGGT TATCGTACTT TTTTGAGTTT ATGCAGCCAC
GAATTTCTGC ATACTTGGCA TGTAAAACGT ACCAAACCCG CTGCGCTGCA GGCCAGCAAC
CTTAGTTATG AAGCGTATAC TCCCCAACTA TGGATTTACG AAGGCTTCAC CAGTTACTAC
GACGATTTAA GCCTTACCCG CAGCCATGTG ACCAACAATG AAAGCTATTT AGAAGTATTA
GGCCAAACGC TTACGCGTTT AGAGCGTAAT GCGGGTCGCT TTAAACAAAC CGTCACAGCC
TCAAGCTTTG ACGCCTGGAC CAAGTTCTAT CAACAAGATG CTAGCGCCAT CAACAACATT
GTCAGTTATT ATGTCAAAGG GGCTGTTATC GCGCTGTGTC TTGATTTGCA CATACGCGCG
GCAAGTCAAC ACACCAAAAG CTTAGACGAT GTCATGCGTT ACTTATGGCA GCACCATGGC
AAAATGAATA TAGGCACGCC GGATGACATT ATTCAACATA TCGTACTCAA CGAAATGGGT
TTACCACTCG CTGCGTTCCT GCAAGATGCA TTGCACACAA TCAAAGAGCT CCCGGTCAGC
CACCTATTGC ATGACTTTGG GGTGACATTG CACAAGCGCC CACGTATTGA TGCCAGCGAT
GCGGGTGGAA AGCCTGCTCC TCGGGTCCAA AAAACTCAGT TTGGCGCAGC CTTTAAAGCT
GCAGACACCG GGGTATTAGT GACCCAAGTT AGCGAAAATA CGCCAGCCTA TAACGCTGGA
CTACAAGTGG GCGATCAGCT GATCAGTTTT GATGACTGGC AAGTGTCCGC TGCAAACTTA
CTGACAATTT ATAATCAATA TGCTGCCAAA AGTAACGTGA CGTTAACGGC TCTGCGTCAC
CAACGGCTTA AACAAATTGA CCTCACCGTA GAAAATGCCT CGCTAGACAC GATTTACTTG
ACCATATCGG ATGCGCAAAA GTTGAAAAAC TGGCTGCCTG TGAGCAAATA A
|
|---|
| Protein sequence | MLQHSADIHY TLNVSSLAGH MLDVSLQINM PSSDGHELTL PAWIPGSYMI RDFAKNIVEI
SAQDAQGQAL SIHKLDKQTW KLPANSGPIT VNYSVYAFDL SVRSAYVFDD FAFFNGTSTF
LAIKEHREAP VLVTLIRPEQ AQCKHWRVAT TLPLARATEH HDFGDYCADN YNDLIDHPIL
MGNYDIVPFD VVTPVASTSS QQSAEHICHF ELILAGGHRS DTQRMAADLR KLCAHHFTLF
GDTPPVERYL FITMLTGKDF GGLEHMSSTA LLYSRDDLPS TAQADHMPDG YRTFLSLCSH
EFLHTWHVKR TKPAALQASN LSYEAYTPQL WIYEGFTSYY DDLSLTRSHV TNNESYLEVL
GQTLTRLERN AGRFKQTVTA SSFDAWTKFY QQDASAINNI VSYYVKGAVI ALCLDLHIRA
ASQHTKSLDD VMRYLWQHHG KMNIGTPDDI IQHIVLNEMG LPLAAFLQDA LHTIKELPVS
HLLHDFGVTL HKRPRIDASD AGGKPAPRVQ KTQFGAAFKA ADTGVLVTQV SENTPAYNAG
LQVGDQLISF DDWQVSAANL LTIYNQYAAK SNVTLTALRH QRLKQIDLTV ENASLDTIYL
TISDAQKLKN WLPVSK
|
|---|
| |