| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2376 |
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| Symbol | |
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| ID | 4172533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2890079 |
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| End bp | 2890333 |
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| Gene Length | 255 bp |
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| Protein Length | 84 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055387 |
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| Product | cold-shock DNA-binding domain-containing protein |
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| Protein accession | YP_661946 |
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| Protein GI | 109898691 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000357457 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTCAGT TCAAGGGATT AAAAGGAAGC AGAAGTATGG CTGTTGGCAA AGTAAAATGG
TTTAACAACG CAAAAGGGTT TGGTTTTATC GTTCCAGAAG ATGGTGGTGA TGATATTTTT
GCTCATTACT CAACTATCCA AATGGAAGGT TACCGCTCGT TGAAAGCCGG GCAAGAAGTT
AAGTATGATG TGCAGCAAGG GCCTAAGGGT CTACACGCTG AAAACATCGA CTTTAACGGT
GAGCCCGAAC AATAA
|
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| Protein sequence | MRQFKGLKGS RSMAVGKVKW FNNAKGFGFI VPEDGGDDIF AHYSTIQMEG YRSLKAGQEV
KYDVQQGPKG LHAENIDFNG EPEQ
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