| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2374 |
|---|
| Symbol | |
|---|
| ID | 4172531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2887305 |
|---|
| End bp | 2889572 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055385 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_661944 |
|---|
| Protein GI | 109898689 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00226066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA AAGAATTAGA ACAAACGTTA AATGAAGCGT TTATCTTTGC TCGAGAGCAT
AGACACGAGT TCATGACAGT CGAGCACCTT CTGTTGGCTT TGCTTGACAA TGGCTCTGCA
ACCGAAGCAC TACAGGCGTG TGGTGCAAAT GTCGATATTA TCAAAAAAGA GTTAACCGAT
TTTGTAAAAG ACACTACGCC ACTATTACTT GAGGACGCAA ATAACGAACG CGAGACTCAG
CCCACTTTGG GTTTTCAGCG CGTATTGCAA CGTGCGGTAT TTCACGTTCA ATCTTCGGGT
AAAGAAGAAG TGACAGGAGC CAACGTTCTG GTTGCTATTT TTAGCGAGCA GGAATCGCAG
GCAGTATATA TTCTGAAAAA AGCCGATGTT ACTCGCCTTG ATGTGGTTAA CTTTATCTCC
CACGGCGTGT CCAAGAATGA TGAAGAGACA CCGCATTCTA TTGAGCAGGA CGAAGAGGGC
GCAGGTCAAG AATCTGGTTC GTCTATGCTA GATCAGTATT CCACGAATCT AAATGAGCTC
GCCAAAGAGG GAAAAATTGA TCCTCTGATT GGGCGTGACT TTGAGGTGGA GCGCAGTATT
CAAATACTCT GTCGTCGCCG AAAGAACAAT CCTTTATTGG TCGGTGAAGC AGGGGTAGGT
AAAACAGCGA TTGCGGAAGG CTTAGCCTTT AGAATTGTTC ACAATGATGT GCCTGACGTC
ATCGCTAACG CCGTAATTTA CTCTCTGGAC ATGGGTACCC TCTTAGCGGG CACTAAATAC
CGTGGTGACT TCGAGAAGCG CCTTAAAGGG ATATTGAAAG AGTTAGCTAA GGATCCCGAT
GCAATTTTGT TTATTGACGA AATTCACACC ATCATTGGTG CGGGTGCAGC ATCTGGCGGA
GTCATGGATG CATCAAACCT ATTAAAGCCC AAATTAAGTA GCGGAGAGCT GCGCTGTATG
GGCTCGACCA CGTATCAAGA GTACCAAGGT ATTTTTGAGA AAGATCGTGC ATTAGCACGT
CGCTTCCAGA AAGTGGATGT TATCGAACCG TCAGTGGCTG ATACCACAAA AATATTGATG
GGCCTTAAGT CTCGCTATGA GGAGCATCAC AGTGTGCGCT TCACGCAGAA AGCGATTCGC
GCCGCGGCAG AGTTGTCAGC GAAATACATC AATGAACGCC ACTTGCCAGA TAAAGCAATT
GACGTAATGG ATGAGGCTGG GGCAAGTCAG CGCTTATTGC CGCCCTCGAA ACGCAAGAAA
ACCATTGGTG TGACGGATAT TGAGCACATC ATTTCAAAAA TTGCGCGTAT CCCTGAAAAG
TCTGTGTCAT CCAGTGACAA AGAATCGCTG AAAAATCTTG ATAGAGATTT AAAGTTGGTG
GTGTTTGGTC AAGATCAAGC AATCGATACA TTAACTGACG CTATCCGTTT GTCTCGAGCG
GGCCTCGGTG CAGAAACCAA GCCGATTGGT AGCTTTTTGT TTGCTGGCCC AACGGGGGTT
GGTAAAACGG AAATTACCCA ACAGCTTTCA AATATTATGG GCGTTGAGTT ATTACGCTTC
GATATGTCTG AATACATGGA ACGTCACGCA GTGAGCCGTT TAATTGGTGC GCCCCCAGGG
TATGTAGGCT TTGATCAAGG CGGGTTACTG ACGGATGCTG TGATTAAGCA CCCTCATTCT
GTAGTGCTGC TGGATGAAAT TGAAAAAGCC CATTCAGACG TGTTTAACAT CCTATTGCAG
GTAATGGACC ACGGAACACT GACAGACAAC AATGGCCGTA AAGTGGACTT CCGCAATGTT
ATTTTGGTCA TGACCACGAA TGCTGGGGTA CAAGAAACTA TTCGTAAATC GATTGGTTTC
AAGCAACAAG ATCATAGCCA TGATGCAATG TCTGAAATCA ATAAAGTGTT TACCCCCGAG
TTTAGGAACC GTTTAGACGC GATTGTGTGG TTCAATCACT TGGAGCAAGA CGTGATATTG
CAAGTCGTTG ATAAGTTTAT TATTGAGCTG CAAGTTCAGT TGGATAACCA AGGTGTATCT
TTGGAAGTAA CAAACGAAGC AAGGCAGTGG TTAGCGCAAG AAGGCTATGA TAGAAACATG
GGCGCGCGTC CTATGTCTCG TGTTATTCAA CAGCAGGTCA AGAAAGAGCT TGCCAGTGAA
TTGCTGTTTG GTGAACTTAG CCAGGGTGGA AGCGTCAAGA TTTCGTTGAA GAACAAGAAA
CTGGTTTTCA CTTTCAAAGC GTTGAAAGAA GAGAAATCTG AAGCCTAG
|
|---|
| Protein sequence | MLNKELEQTL NEAFIFAREH RHEFMTVEHL LLALLDNGSA TEALQACGAN VDIIKKELTD
FVKDTTPLLL EDANNERETQ PTLGFQRVLQ RAVFHVQSSG KEEVTGANVL VAIFSEQESQ
AVYILKKADV TRLDVVNFIS HGVSKNDEET PHSIEQDEEG AGQESGSSML DQYSTNLNEL
AKEGKIDPLI GRDFEVERSI QILCRRRKNN PLLVGEAGVG KTAIAEGLAF RIVHNDVPDV
IANAVIYSLD MGTLLAGTKY RGDFEKRLKG ILKELAKDPD AILFIDEIHT IIGAGAASGG
VMDASNLLKP KLSSGELRCM GSTTYQEYQG IFEKDRALAR RFQKVDVIEP SVADTTKILM
GLKSRYEEHH SVRFTQKAIR AAAELSAKYI NERHLPDKAI DVMDEAGASQ RLLPPSKRKK
TIGVTDIEHI ISKIARIPEK SVSSSDKESL KNLDRDLKLV VFGQDQAIDT LTDAIRLSRA
GLGAETKPIG SFLFAGPTGV GKTEITQQLS NIMGVELLRF DMSEYMERHA VSRLIGAPPG
YVGFDQGGLL TDAVIKHPHS VVLLDEIEKA HSDVFNILLQ VMDHGTLTDN NGRKVDFRNV
ILVMTTNAGV QETIRKSIGF KQQDHSHDAM SEINKVFTPE FRNRLDAIVW FNHLEQDVIL
QVVDKFIIEL QVQLDNQGVS LEVTNEARQW LAQEGYDRNM GARPMSRVIQ QQVKKELASE
LLFGELSQGG SVKISLKNKK LVFTFKALKE EKSEA
|
|---|
| |