| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2364 |
|---|
| Symbol | |
|---|
| ID | 4172521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2879404 |
|---|
| End bp | 2880111 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638055375 |
|---|
| Product | DNA polymerase III, epsilon subunit |
|---|
| Protein accession | YP_661934 |
|---|
| Protein GI | 109898679 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.109784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAAA TCGTACTTGA TACAGAAACG ACCGGTATCG ATCCTAGGCA AGGTCATAGA
ATCATTGAAA TAGGCTGTGT GGAGTTATTA AATCGCCGCT TAACAGGTAA CACGTTTCAT
GTGTACGTTA ATCCCCAAAG ACTCATTGAA CAAGAAGCGA TAGAGGTTCA CGGTATTACT
AACGAGTATC TGTTAGACAA ACCGCTTTTT GCAGATGTTG CTGCTGATTT TGTAAAGTTC
ATCAGTGGCG CTCAGCTCGT TATTCATAAT GCGCCGTTTG ATGTGGGCTT TATGGATCAC
GAGTTTGCTC GTGTTGCTGC GATGGCGGGC AAAAAAACCA GTGATATGTG TACCGTGTTA
GATACACTCG AAATGGCGCG GCAAATTCAC CCGGGTCAGA AAAACAATCT AGATGCTTTG
TGTAAACGCT ACGGTATAGA CAACTCCCAT CGAGAATTGC ACGGCGCATT ATTGGATTCC
GAGATACTCG CTGACGTTTA TCTAATGATG ACTGGCGGGC AAACGGATCT TAATTTGTCT
GGTAAGTCGA ACTCCGATGG CGGCAGTCAG GTTGAACGTA TTCGCAGGCT TGATCCTCAG
TTAAATCAGT TAAAGGTTTT ACGCGCCACA GCCGATGAAT TAGTAGAGCA CGAGAAGCGT
TTAGATCTGG TTAATAAAGA AGGCGGTTCT TGTTTGTGGC GTGAATAA
|
|---|
| Protein sequence | MRQIVLDTET TGIDPRQGHR IIEIGCVELL NRRLTGNTFH VYVNPQRLIE QEAIEVHGIT
NEYLLDKPLF ADVAADFVKF ISGAQLVIHN APFDVGFMDH EFARVAAMAG KKTSDMCTVL
DTLEMARQIH PGQKNNLDAL CKRYGIDNSH RELHGALLDS EILADVYLMM TGGQTDLNLS
GKSNSDGGSQ VERIRRLDPQ LNQLKVLRAT ADELVEHEKR LDLVNKEGGS CLWRE
|
|---|
| |