| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2361 |
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| Symbol | |
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| ID | 4172515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2875461 |
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| End bp | 2876144 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055369 |
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| Product | lipoprotein releasing system, ATP-binding protein |
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| Protein accession | YP_661931 |
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| Protein GI | 109898676 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0014315 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCATGAAC TGCTGAAATG TGACCATTTA TCTAAACAGT ATGACGATGG TAAAGAAAGT
GTTCAGATAC TAAATAATGT AAATCTAAGC GTGAATACAT CTGAACAGCT CGCCATTATT
GGCAGTTCAG GCTCAGGAAA AAGTACTTTA TTACACTTAC TTGGGGCATT GGATCAGCCC
ACATCGGGCA CCGTACTTTT TGAACAACAC GATATCTTTT CCTTCACAAG TGCCGAACAG
GCGAAATTTC GTAATCAATC ACTCGGCTTT GTCTATCAAG CCCATCATTT ATTACCTGAA
TTTAGTGCGC TGGAAAATGT GGCTATGCCT CGCTTGATTG CCAATGAAAA ACGCGAAGAA
GCGATGCATC ATGCACAGAA TATGCTTGAA AAGGTCGGTT TAGCCCACCG CTTAACACAC
AGGCCAAGTA TGTTATCTGG CGGAGAGCGA CAACGCGTGG CGATCGCCAG AGCATTGGTT
AATCAGCCAA AATTAGTGTT GGCCGACGAG CCAACGGGTA ACTTGGACAC CAAAACCGGT
GAAGGGATCT ATCAGTTGTT GAATGAATTG CGTGACATCA GCCAAACAAG TTTTATCGTG
GTCACCCATG ATATTCAGTT AGCGAAACGC CTCGACCGTT CTCTGCGTTT AGTCAATGGG
CAACTTAGCC CACAACTCGA TTAA
|
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| Protein sequence | MHELLKCDHL SKQYDDGKES VQILNNVNLS VNTSEQLAII GSSGSGKSTL LHLLGALDQP
TSGTVLFEQH DIFSFTSAEQ AKFRNQSLGF VYQAHHLLPE FSALENVAMP RLIANEKREE
AMHHAQNMLE KVGLAHRLTH RPSMLSGGER QRVAIARALV NQPKLVLADE PTGNLDTKTG
EGIYQLLNEL RDISQTSFIV VTHDIQLAKR LDRSLRLVNG QLSPQLD
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