| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2360 |
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| Symbol | |
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| ID | 4172514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2874212 |
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| End bp | 2875447 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055368 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_661930 |
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| Protein GI | 109898675 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.069448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTGA TTTTTCAATT GGCGTGGCGA TTTCGCAGCA GTAAGCAGCA AAATGGCTAC
ATTTCGTTTA TTTCTGCTTC GTCAACATTT GGCATAGCCT TAGGCTGTTT CGTACTGATT
TTGTTGCTAT CTGTTATGAA TGGCTTTGAA CGAGAACTTA AAGACCGACT TTTATCAATC
ATTCCACATG GTGAACTATA TGCCGTCAGT AGTCAGGGTA TTTCCGATTG GCAAAAAGAA
GTAACAGCCT TACAGTCAGA CCCGCGCATT GAGTCTGTTC AGCCCTACAC AAAGGCCACG
GGCATGTTGC AGAAAGGCAA AAAAATGAAA GCCATTGAGT TAGTGGGCAT CGATACTAAG
TACGCAGAAA ATGACGGCAT GCTTAGCAGT GTACCAGCCG AGCAATGGCA GGCGTTTAGC
GCCAATCAGC AGGGCGTAAT GCTGGGGGCT GGAGCGATGG CTAAACTGGG TATTTTGTTA
GGCGATAAAG TGAAACTGCT GCTACCTCAG TTAAGTGATG ACTTGTCCAT TCGGGCTCCT
AAAACACTTT GGTTAACCGT GGTCGGTGAA GTTAAAATTG GCGGTGAGTT AGATAATCAC
ATTGGCTATA TGCATTTGCC ATTGGCCTCA GAAACCCTAG GGGTCACTCA TGGCGTGCAA
GGTTTGCGTT TTCGCTATCA CGACCCATTC GCCGCCCCCA TGATTACCCG TGAGATCGGT
TACGGTTTCC CCCATGAAGT CTTCATGTCT GATTGGACTC GGACCCAAGG TCACTTATAC
CAAGATATTC AATTGGTGCG TGTGGTGGTG TATATCACGT TGATACTTGT GATAGGTGTG
GCGTGTTTTA ATATTGTGTC GACGTTAGTG ATGGCGGTAA ACGAGAAGCA ATCTGAAATT
GCCATGCTCA AAACAATGGG TACAACCGAC CGCAGTATTA TTCTGATTTT TATGCTCCAG
GGCCTCATAA ATGGCCTAAT AGGCACTGTA ATTGGTTTGG TTTGCGGCGT TTTAATGGCG
TTAAATTTAT CTTCGGTCGC CCAAGGTATT GAACGTCTAA CAGGTTTTCA GTTTTTATCC
GGAGATATTT ACTTTATCAA CTTCTTACCG TCTGCCTTGA AATGGCATGA GGTCTATATT
ACCGGCTTCA TCGCTATCGC ATTGACCTTG CTGGCAACGC TTTATCCTGC GCGCAAGGCA
GCTAGGGTTA ACCCCGCCAC TGTTTTGGGG CATTAG
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| Protein sequence | MNLIFQLAWR FRSSKQQNGY ISFISASSTF GIALGCFVLI LLLSVMNGFE RELKDRLLSI
IPHGELYAVS SQGISDWQKE VTALQSDPRI ESVQPYTKAT GMLQKGKKMK AIELVGIDTK
YAENDGMLSS VPAEQWQAFS ANQQGVMLGA GAMAKLGILL GDKVKLLLPQ LSDDLSIRAP
KTLWLTVVGE VKIGGELDNH IGYMHLPLAS ETLGVTHGVQ GLRFRYHDPF AAPMITREIG
YGFPHEVFMS DWTRTQGHLY QDIQLVRVVV YITLILVIGV ACFNIVSTLV MAVNEKQSEI
AMLKTMGTTD RSIILIFMLQ GLINGLIGTV IGLVCGVLMA LNLSSVAQGI ERLTGFQFLS
GDIYFINFLP SALKWHEVYI TGFIAIALTL LATLYPARKA ARVNPATVLG H
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