| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2356 |
|---|
| Symbol | |
|---|
| ID | 4172510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2866018 |
|---|
| End bp | 2868657 |
|---|
| Gene Length | 2640 bp |
|---|
| Protein Length | 879 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055364 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_661926 |
|---|
| Protein GI | 109898671 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0613436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGT CTCTGGTCAT TGTCGAATCA CCGGCAAAGG CGAAAACAAT TAATAAATAT
CTCGGAAAAG ATTTTATTGT TAAATCTAGT GTAGGCCACG TTCGAGACCT TCCAACGAAA
GCTTTAGGCA AAGTTCCGCC TAAAAAACCG GCAAAAGAGC TAAAATTATT ATCGGAAAAA
AAGCGTGAAT CGTATTTACG CGAGCATGAA TATCGCAAAT TAGTTGATCG TATGGGCGTC
GATCCGAAAA ACGATTGGGA AGCCCATTAC GAGGTCCTTA ACGGTAAAGA AAAAGTCGTT
AACGAACTTA AAAAGTTAGC CAAAAATGCT GACACTATCT ATCTCGCAAC GGATTTGGAT
AGAGAAGGGG AAGCCATCGC TTGGCATCTA CAAGAATTGA TCGATGATCC CTCAAAAGAT
TATCAGCGTG TGGTGTTTAA CGAAATCACC AAAAACGCCA TTCAAGAAGC CTTCTCTGAA
CCTGGGAAAG TCAACGTTGA GCGGGTTAAT GCACAGCAAG CTCGTCGATT CCTCGATCGT
ATTGTGGGCT TCATGGTGTC GCCATTATTA TGGAAAAAGG TCGCTCGAGG CTTATCCGCT
GGTCGTGTTC AATCTGTTGC TGTACGTCTT GTCGTTGAGC GTGAACGTGA AATTAAGGCC
TTTGTACCCG AAGAGTTTTG GGACGTGCAC GCGGACCTAG TCACGGCAAA ACAAAGTGAC
CTGCGTATGC AAGTTGCTAA ATACAATGAC AAAGCATTTA AGCCGGTCAA TAAAGCGCAA
ACAGATGCGG CCTTATCCGA TTTAGAAGGG GCTGATTACA AGGTTGTGAG TCGTGATTCA
AAACCGACTC AATCTCGTCC ATCAGCACCT TTTATAACCT CAACTTTGCA ACAAGCCGCC
AGCACGCGCT TAGGCTTTGG TGTAAAGAAG ACCATGATGA TGGCTCAACG CTTGTATGAA
GCGGGTCACA TCACGTATAT GCGTACCGAC TCAACCAATT TAAGCAAAGA AGCGGTCGAT
GCCTGTCGTG ATTATATCGG TGATAATTTT GGTGATAAAT ACTTACCAGA AAATGCCCTG
AAGTACGGTA GCAAAGAAGG TGCTCAAGAA GCCCACGAGG CTATCCGCCC GTCAAATGTG
CTGCTTAAAT CAGAGTCTTT ATCTGAAATG GAACGTGACG CGCAACGCTT ATACGAGCTT
ATTTGGCGTC AGTTTGTTGC TTGTCAAATG ACACCTGCAA AATACGATGC GAGCACCATT
CGCGTATCAG CTAATGGTTA TGAGTTGACC GCAAAAGGTC GCGTGTTGAA GTTCGACGGT
TGGACTAAAG TACAAAACCC TCAGCGTAAG AAAGGCGAAG AAGACTTCTT GTTGCCGGAT
GTAAAAGAAG GCGAAAGTCT TAATCTTAAA CAACTTGATC CGAAGCAGCA TTTTACTAAA
CCTGTGGCTC GTTTTAATGA AGCATCCTTG GTAAAAGAAC TGGAAAAACG CGGTATTGGT
CGCCCATCAA CCTACGCTAG TATCATTTCT ACCATCCAAG ATCGCGGTTA TGTGCGCCTT
GAGAGTAAGC GTTTCTATGC TGAAAAAATG GGTGAAATAG TCAACGATCG CTTGCTGGAG
AATTTTGATA ATCTGCTGAG TTTTGATTTC ACCGCCAAGA TGGAACAAGA GCTAGATGAA
ATTGCCAACG GCAAAGTCTC GTGGAAAGAC GTACTCAACG ATTTTTACGG TGATTTCGAA
CAGAAGTTGC ACCTAGCGGA AAAAGATCCC GAAGACGGCG GTATGCGCTT AAACCAAGCG
GTACCAACAG ATATTGCCTG CCCCAAATGT GGTCGCCCAA TGAACGTGCG TACCGCCAGT
ACCGGTGTGT TTTTAGGTTG CTCTGGTTAT AACTTACCAC CGAAAGAGCG CTGCACCGGC
ACCATGAACC TCACCTCTGG TGACGAAGTT ATCAAGGTAG ATGACGAAGA AGAGCTTGAG
ACTGAGTTAC TGAGAGCGAA ACGACGTTGT CCGATTTGTG CTACCGCCAT GGATAGCTAC
TTGGTGGATG AAACTCGTAA ACTGCATGTG TGTGGTAATA CGCCTACGTG CCCCGGTATC
GAAGTTGAAG AAGGCACGTT CAAAATAAAA GGTTATGACG GCCCCATTAT CGAGTGCGAC
AAATGTGGTT CAAACATGGA GCTTAAAAAC GGCCGCTTCG GAAAGTACTT TGGTTGTACT
AACGAAGAAT GTAAGAACAC CCGTAAGTTA CTGCGAAACG GTGAAGCTGC GCCGCCTAAA
GAAGACCCAG TGGATTTGCC TGAATTAGAG TGTACTAAAT CAGATGCGCA TTTTGTATTG
CGTGATGGTG CCTCGGGTAT TTTCATGGCA GCGCATAATT TCCCTAAATC ACGGGAAACT
CGTGCGCCGC TTGTGGCTGA ATTAGCGCGC TTTAGGGATC GCATTTCACC TAAGTTTTAT
TACTTGGCAG ATGCGCCGGC TAAAGATCCT GACGGTAACG ACACGCTCGT GCGCTACAGT
CGTAAAACCA AGCAACAATA TGTTATGAGT GAAAACGAAG AGGGCAAAGC CACTGGTTGG
TCCGCTTGGT ACACAGATAA CAAATGGACG GTAGAAGATA AGCGTAAAAA AGCAAAATAG
|
|---|
| Protein sequence | MAKSLVIVES PAKAKTINKY LGKDFIVKSS VGHVRDLPTK ALGKVPPKKP AKELKLLSEK
KRESYLREHE YRKLVDRMGV DPKNDWEAHY EVLNGKEKVV NELKKLAKNA DTIYLATDLD
REGEAIAWHL QELIDDPSKD YQRVVFNEIT KNAIQEAFSE PGKVNVERVN AQQARRFLDR
IVGFMVSPLL WKKVARGLSA GRVQSVAVRL VVEREREIKA FVPEEFWDVH ADLVTAKQSD
LRMQVAKYND KAFKPVNKAQ TDAALSDLEG ADYKVVSRDS KPTQSRPSAP FITSTLQQAA
STRLGFGVKK TMMMAQRLYE AGHITYMRTD STNLSKEAVD ACRDYIGDNF GDKYLPENAL
KYGSKEGAQE AHEAIRPSNV LLKSESLSEM ERDAQRLYEL IWRQFVACQM TPAKYDASTI
RVSANGYELT AKGRVLKFDG WTKVQNPQRK KGEEDFLLPD VKEGESLNLK QLDPKQHFTK
PVARFNEASL VKELEKRGIG RPSTYASIIS TIQDRGYVRL ESKRFYAEKM GEIVNDRLLE
NFDNLLSFDF TAKMEQELDE IANGKVSWKD VLNDFYGDFE QKLHLAEKDP EDGGMRLNQA
VPTDIACPKC GRPMNVRTAS TGVFLGCSGY NLPPKERCTG TMNLTSGDEV IKVDDEEELE
TELLRAKRRC PICATAMDSY LVDETRKLHV CGNTPTCPGI EVEEGTFKIK GYDGPIIECD
KCGSNMELKN GRFGKYFGCT NEECKNTRKL LRNGEAAPPK EDPVDLPELE CTKSDAHFVL
RDGASGIFMA AHNFPKSRET RAPLVAELAR FRDRISPKFY YLADAPAKDP DGNDTLVRYS
RKTKQQYVMS ENEEGKATGW SAWYTDNKWT VEDKRKKAK
|
|---|
| |