| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2351 |
|---|
| Symbol | |
|---|
| ID | 4172505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2861567 |
|---|
| End bp | 2862541 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055359 |
|---|
| Product | HPP domain-containing protein |
|---|
| Protein accession | YP_661921 |
|---|
| Protein GI | 109898666 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3448] CBS-domain-containing membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTAC ATTCTTTTTT TTACGAGCTT AGACATCTAC TTGGCATTTC TGCTAATACC
ACCAGTCACA ATGAAAAAAT CATATCCGCC TTAGGGGGTG CTTTAGGGAT CGCTGGGATA
ATGTGGGTCA TGCATTTTGT AGTGCAAGCA CAACTGTTAA CAATGCATAG CAGTATTATG
ATCATCGCTT CGATGGGGGC AAGCGCCGTC TTGCTATTTG CTGTGCCTCA CGGGGCGCTT
TCGCAGCCGT GGGCTGTTAT CGGTGGGCAC CTCATTTCAG CTGTGCTGGC GATAACCAGC
GTAAAGTTTC TAGGGCATGG GTCTTGGGTT GCCGCTTTTG CTGTGGGCGG CGCAATAGGA
GCTATGTATT ACTTACGTTG CATTCATCCC CCTGGCGGAG CAACTGCGCT TACAATCGTG
GTTGGCGGGG CAGACATCAA CGCCTTGGGG TATGATTTTT TATGGTTGCC ATTGGGGCTG
AACCTAATCG TCATCATGCT TATTACATTG GCGTTTAATG GTTTATTTGA TTGGCGACGT
TATCCGGTGC ACCTTTCTCA CAAGCTAAAA AGAGGCGCTA GTACCCCATC GGCCGAGCGG
GAGCATGAAT TAACCCAAGA AGATTTTGCC GCTGCTATGC AAGAGTTAGA TTCATACGTG
GATATCACCC CAGATGGCTT GACGGACTTA TTGGAGTTAG CCAAAAAGCA TGCTGAAAAA
AATACCACGC ATCCATCCCG TATTATCGCG GGGCGGATAT ACAGTAATGG CAAATTGGGG
CGATTGTGGA GTATTCGCCA GGTCGTTGAT GCAGCACCGG CAAACACTCA TGCCAGTAAA
GACAAGGTAA TATACAAAGT GTTAGCTGGT GATGGTGGTT ATGAAACACA TATGTGTTTA
CGCCGCGAGT TTCACACATG GGCGCGTTTT GAAGTGGAAA AACATAATCA GCAATGGGTG
AAAGTAGAGG AATAA
|
|---|
| Protein sequence | MRLHSFFYEL RHLLGISANT TSHNEKIISA LGGALGIAGI MWVMHFVVQA QLLTMHSSIM
IIASMGASAV LLFAVPHGAL SQPWAVIGGH LISAVLAITS VKFLGHGSWV AAFAVGGAIG
AMYYLRCIHP PGGATALTIV VGGADINALG YDFLWLPLGL NLIVIMLITL AFNGLFDWRR
YPVHLSHKLK RGASTPSAER EHELTQEDFA AAMQELDSYV DITPDGLTDL LELAKKHAEK
NTTHPSRIIA GRIYSNGKLG RLWSIRQVVD AAPANTHASK DKVIYKVLAG DGGYETHMCL
RREFHTWARF EVEKHNQQWV KVEE
|
|---|
| |