| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2345 |
|---|
| Symbol | |
|---|
| ID | 4172499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2855309 |
|---|
| End bp | 2855713 |
|---|
| Gene Length | 405 bp |
|---|
| Protein Length | 134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055354 |
|---|
| Product | putative prophage repressor |
|---|
| Protein accession | YP_661916 |
|---|
| Protein GI | 109898661 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAT TTATTCCTAT TAAAGCCTCT GCCGGTATTG TTGGGTTCGA ATCCCCTGCA
ACAGAATATA CCCAGCTAAG CCTAGATTTA GACCAACTCT TGATTGACCA TCCATCTGCG
ACCTATATCG GTATCGCACA GGGGGAGTCG ATGACCGGAG ACGGTATTTT TTCCGGCGAC
TTACTGATTG TCGACCGTGC CCAAGATATT AAAGATCGAG ACGTGGTGGT CGCCAACCTC
AATGGTGTAT TTGTGTGTAA AAAGATTGAT AAAGTGCAGC GTTGTCTACT GTCATCCAGT
AATCGATTTC CCCCCTATTT TTTACAAGAA GGCGATGATT TCCAAATAGA GGGTGTGGTG
ACGCGCTCGA TCCGCCTGCA TCGACCTTTT AAAAAGCCAA TGTAA
|
|---|
| Protein sequence | MLKFIPIKAS AGIVGFESPA TEYTQLSLDL DQLLIDHPSA TYIGIAQGES MTGDGIFSGD
LLIVDRAQDI KDRDVVVANL NGVFVCKKID KVQRCLLSSS NRFPPYFLQE GDDFQIEGVV
TRSIRLHRPF KKPM
|
|---|
| |