| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2344 |
|---|
| Symbol | |
|---|
| ID | 4172498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2854044 |
|---|
| End bp | 2855309 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055353 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_661915 |
|---|
| Protein GI | 109898660 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCTC TATGTGATGC CAACAGCATG TACGCGAGTT GCGAAAAAGT GTTTGATCCA
AGTATTCGCA ATAAGCCAGT GGTGGTGTTG ACCAACAACG ATGGCTGTAT TTGTGCAGCG
TGTGGCATTG CCAAACGAAT GGGTGTCGGG AAGAAGTTCG TACCTTATTT TCAGGTCAAA
AAAGAGCTAG AAGCGGCAGG TGTCGTTATT CGCTCAAGTA ATTACGAGCT TTATGCCGAC
CTGAGTCAAC GCATGATGGA TACGTGCGCG CGCTTTGCCC CTGACATCAA TGTGTACTCT
ATCGATGAAT GTTTTTTATA TTATGGTAAA GACGCAACTG CGCCCCAAGA TGGTTGGAAT
AACCTTGCTA ACAGTATTCG AAAAACCGTG TGGCGGGAAG TGAGGTTGCC TATCTGTGTT
GGCATAGGGC CGACGCCTAC ATTGGCTAAA GTGGCCAATC ACGCGGCTAA AAATGTGAGT
GGTTTTATCG GCGTGGCAGT GCTGGATAAC GAAGATGCGC GTAAGCATGT GCTGAAGCAA
CTGGCTGTGA CTGACGTGTG GGGCATAGGA AAACGTTTAG GTGTTAAATT GAATGCGCTG
GGGATCCACA CAGCGTGGGA GCTTGCAAAC CGTGACCCGT CGCACATCAG AAAGGCGTTT
TCGATTATCG TGGAAAACAC GGTGCGAGAG CTAAATGGCG AGATTCGTCA CTGCTGGGAA
ACCGTAAGAG GGGCCAAAAA AGAAATATAC AGTACGCGCA GTTTTGGCAG TCGCGTGACT
GATTATGATG AATTGCGAGC GGCGCTTGCT GGTCATGCTG AAACTGTAAG TGTGAAACTG
CGTAAACAAA AAAGCGTGAC CAGTAGTATG ACGCTTTTTG CCACTAATTC TCCCCATGAT
AATGGCGGGT ATGTGCGGCG CTCTTTCTTT CATCGCTTCA CTGTGCCCAC AAATGACACG
CGTAATATAC TTCATGTGAT TGACAGTGCA ATGTCTCAGC TTTTTCAACC GGGTGTACAT
TATTACAAAT GTGGTGTCGG GTTGATGGAC TTACATGAGC AGGATTTATA TCAGTATGAT
TTATTTAACC CGTCGAATGA CAACTCAAGG TTGATGGCAT GTATGGACAA TATTAACTCG
CGCTACGGAC GTTCAACCGT GCAAATGGCG GCCAAAGGCT TTGAGCAACG TTTTTCTATG
AAGCGGGCGT TTTTGTCCCC GCAGTACACG ACGCAGTGGC GAGATATACC AAAAATTAAG
TGCTAG
|
|---|
| Protein sequence | MFALCDANSM YASCEKVFDP SIRNKPVVVL TNNDGCICAA CGIAKRMGVG KKFVPYFQVK
KELEAAGVVI RSSNYELYAD LSQRMMDTCA RFAPDINVYS IDECFLYYGK DATAPQDGWN
NLANSIRKTV WREVRLPICV GIGPTPTLAK VANHAAKNVS GFIGVAVLDN EDARKHVLKQ
LAVTDVWGIG KRLGVKLNAL GIHTAWELAN RDPSHIRKAF SIIVENTVRE LNGEIRHCWE
TVRGAKKEIY STRSFGSRVT DYDELRAALA GHAETVSVKL RKQKSVTSSM TLFATNSPHD
NGGYVRRSFF HRFTVPTNDT RNILHVIDSA MSQLFQPGVH YYKCGVGLMD LHEQDLYQYD
LFNPSNDNSR LMACMDNINS RYGRSTVQMA AKGFEQRFSM KRAFLSPQYT TQWRDIPKIK
C
|
|---|
| |