| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2341 |
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| Symbol | |
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| ID | 4172495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2849088 |
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| End bp | 2852603 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055350 |
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| Product | agarase |
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| Protein accession | YP_661912 |
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| Protein GI | 109898657 |
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| COG category | [N] Cell motility |
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| COG ID | [COG5492] Bacterial surface proteins containing Ig-like domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.384937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAAAG TCATTCCGTG GTTGCTTGTA ACGTCGAGTT TGGTCGCGAT ACCAACATAC
ATACACGCAA CGACAGAGGT AGTTGTTAAT TTGAATGTCA AACATTCAGT TGAAGGTAAA
TCTGAATTTG AGCGCAAAAA CCATATAAAA CTGCATTCCA CGCTAAACGA TAATGATTGG
CAGGGTGAAG AAGACAAACT TAAGTATATG ATGGAAGAGT TAGACGTTTA TTTTGGTCGA
GATAACGGTG GCACCGTTTG GAATTTTAAC CAAGCCATTG AGGACCCAGC CAACATAGGT
TATGCAGATC CGCAGAATAT CATCGCTCGG GGTCAAGCCC AGCGCGAAAC CAATTGGGGA
CAAAACAAGT CTGCTTTACA TCAATACGAT GGCCGAGGAG ACTTGATGAT AGGCGGCCAA
CCCAGAGCGC ATTATCTAGG TAACACTTCA CCTTGTTGCG GTGGAAGTGC TTGGCAAGCA
AAAGGTGGCG ACGCGGTCGG TGATTTCCTT GGACAATATG TTAACGAGTT TTTTCGTTCT
GCGGGTGATC CCGTGACAAA GGGACACCTA GCGCCCGTTT ACTTTGAAGT GCTTAACGAA
CCTCTTTATC AGGTAACGGA TGCGCCACAT GAACTCGGAT TAGAGCAGCC CATCCCGCCA
ATCGATATTT TTACCTTTCA TAACGACGTT GCCGATGCTT TTCGACAACA CAACACCCAT
ATAAAAATTG GTGGCTTTAC GGTGGCATTC CCTATATTTG AGCAAAGAGA GTTTGCTCGC
TGGGAAGAAA GAATGAAGCT ATTTATTGAT ACCAGTGGCA GCCATATGGA TGTGTATTCA
ACCCATTTTT ATGATCTTGA GGACGACAAT CGTTTTAAAG GTAGTCGACT CGAAGCAACA
TTAGACATGA TAGATCAATA TTCGCTACTC GCTTTAGGTG AAACCAAACC TCACGTTATT
TCAGAATATG GCGGCCGAAA TAGACCCATG GAAAATGCGC CTTGGTCTGC ATTACGCGAT
TGGTGGTTTC TTAAAACCGC TAGCCCCATG TTAATGCAAT TTCTCAGTCG TCCCGATTCC
GTCTTAACCT CTATTCCCTT TGTCCCCATC AAAGCGTTGT GGGGCACGGC AGCAGACGGT
ACGCCCTACA ATTGGCGATT ACTTCGTCAA CAAAAGGAAG CACCGAATGA AACCGGTGAA
AACTGGGTAT TTACTGAAAT GGTCAAATTT TATCAGCTAT GGTCCGATGT AAAAGGCACT
CGCGTTGATA CCTTTTCCAC TAACAGTGAT TTCCTTATTG ATAGCTATGT ACAAAATGAC
AAAGCATATG TGCTGATCAG TAATCTTACT GAACAAGCGG AAAAAATTGT TGTGCACAAG
TACGGCGCGC CTGCGTCAAG TCAGCCCACG ACACGCATTA AGCATCTGTA TCTCAAAGGC
GCAGCCCCCG CGCTTGATGA AACAAGTCAT GCGTCAGATA TCCAAGAAGT CACGATTGCT
GCTGAAGCGA CTATGGTAAT CGAATACGAT TACCCTTCAG ACATCGTCAT CAACGAAACA
TCACAAGAGA AAAAGTATTT TGCCACTGAA TATTTAAAAC CCATTTCAGC CAATCAAATC
AGTCGCTTTA ATATTAATTC GGTTGCTACA AGCGCGCTTG GTGAAGGCAT ATTGCGCGTT
GTTGTTGGGC GTAAGTTAGG CAAGTCTCTC GCACCAACTA TCGCTGTTAA TGGAGAAACC
TTAACAGCTT CAGCACAAAT TTCTGGGGAT ATTCAGAACA CCCGAGGCGA CTTTTTTGGT
GTTATCGAAT TTCCTGTCCC CATTGACCTT TTGCGCACTA ATAACGAAAT AGATGTGACC
TTTGGCGATG ATGGGGGACA TATTGCCAGC GTGAACCTTA AAGTGTTTAG CTTCACATCA
GATGTCCGCC CCAGTGCTGG CCCTGTAAAG GGGATCACTA TTGAGCCCAC ATCGGCTGTG
GTCGCTGTGG GAAGCACACT ACAACTAAAC CCCACTATCA CCCCGTACTT TGCCACCAAC
CAAAATTATT TTTTGCAATC CAGTGCGCCC GAGGTGGCTA CTGTAACGCA AACAGGTTTG
GTGAGTGCCT TAATGCAGGG GGAAGCGAGG ATCACTGCAA CCACTGAAGA GGGCAGCTTT
ATTGCTCAGG TAGACATCGA GGTTGAGTTG CCCTCCCCTA CGTCGATCAC ATTCGATGAT
CAAAGCATTT ACGCAAGTAC GGTATATACC GCAGGTGAAG CTATGCACGT CACCACTGAG
TATGATGCTG GTACGGGCCA TACTGTGACG GCAGCACTTG GCGGGGTCGA ATACAGACTG
CGTCATTTAA CCGCTAGTTT TGGCTTAATA TCTGATGTTG CTATTGTGCA AGATGGTCAC
GCGGTCAATA CTCAACGTGG TACATCTAGC GTCGAATTAG CCCTACCCAC CAATTTACAA
GCCAGTGCAG ACCTCCCTGA TGGCGAGTTC TATTTTTTAT TTGTTAGGGT GGTTTCTAGT
AACGGGGAAA CTCAATCAAC AAGTGCTTTC CCGGTTAGTA TTGAAGCAGG CAATATTGAC
ACAAGCCCGT CGTTAACACT GGATGATGCG CGTAAATATC GCGATACAAT CTACAAAACA
GACCAACAAC TTACTGTAAC AGCACATTAT CAGGCGGGCG ATGGAAATAC AGTGACGAGT
GAGCAAGGCG GCGTGCGCTT TTACCTACGT GAACTGGACG CAAATTTTGG CCTCATCAAT
GACATCATTA TCGAAGATGC CTCAGCAATC GGTCAACAAG TAGGTGCTGC CACCGCTACC
TTTTCACTAG CAGACTTAAC GCCCAGCGCA GCCTTACCTG CTGGGCATTT TTACTATTTG
TTTGCTGTTT TTAATAGCAC CAACGGCGAT AAATATAACA TTCCTGGTGT ATTTCCCATT
CGTATCGAGC AAGAGGTGAG TGAGCTTTCC TTGACATTTA GCGAGCCGAA TTTATATCGC
TCCACAGACT ACGAAGTGGG CGGTTCATTA GCGGTTTCAG TTGATTTTGA TATGGGTACA
GGCAACGCTG TCAGTGATGA GCTAGGCGGT ATACGTTTCT TCTTACGCCA TCTGAGAGAA
GACTACTCTA TGGTTAAAGA CATCATACTC GAAGATGCCA ATGCAATTGG TCAGCAATCG
GGCTCAGCCA GCGTCACGTT TTCCCTCGCC AATATAGCGG CGAGTGATGC ACTACCCGCC
AATGATTTTT ACTTTCTTTA TGTACTCGTC AAGTCCACTG ACGGCGCCAC CCAAGACCTC
GCTGTGCAAC GTATCAACAT CGTCAGCCCT GCGTTGGTCG GCGATTACGA CCTAGATGGC
GACGTGGATA TCAACGACAT ACAAAGCTTA ATCGTTGCTA TTCATATGCG GCAATCTATC
GACCTGTCTT TTGATATGAA TAGCGATGGT ACGGTTAACT TACTCGACAC ACGACTACTC
ATGAACGCAT GCACCCGAAC CCGCTGTGCA CCCTAG
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| Protein sequence | MLKVIPWLLV TSSLVAIPTY IHATTEVVVN LNVKHSVEGK SEFERKNHIK LHSTLNDNDW
QGEEDKLKYM MEELDVYFGR DNGGTVWNFN QAIEDPANIG YADPQNIIAR GQAQRETNWG
QNKSALHQYD GRGDLMIGGQ PRAHYLGNTS PCCGGSAWQA KGGDAVGDFL GQYVNEFFRS
AGDPVTKGHL APVYFEVLNE PLYQVTDAPH ELGLEQPIPP IDIFTFHNDV ADAFRQHNTH
IKIGGFTVAF PIFEQREFAR WEERMKLFID TSGSHMDVYS THFYDLEDDN RFKGSRLEAT
LDMIDQYSLL ALGETKPHVI SEYGGRNRPM ENAPWSALRD WWFLKTASPM LMQFLSRPDS
VLTSIPFVPI KALWGTAADG TPYNWRLLRQ QKEAPNETGE NWVFTEMVKF YQLWSDVKGT
RVDTFSTNSD FLIDSYVQND KAYVLISNLT EQAEKIVVHK YGAPASSQPT TRIKHLYLKG
AAPALDETSH ASDIQEVTIA AEATMVIEYD YPSDIVINET SQEKKYFATE YLKPISANQI
SRFNINSVAT SALGEGILRV VVGRKLGKSL APTIAVNGET LTASAQISGD IQNTRGDFFG
VIEFPVPIDL LRTNNEIDVT FGDDGGHIAS VNLKVFSFTS DVRPSAGPVK GITIEPTSAV
VAVGSTLQLN PTITPYFATN QNYFLQSSAP EVATVTQTGL VSALMQGEAR ITATTEEGSF
IAQVDIEVEL PSPTSITFDD QSIYASTVYT AGEAMHVTTE YDAGTGHTVT AALGGVEYRL
RHLTASFGLI SDVAIVQDGH AVNTQRGTSS VELALPTNLQ ASADLPDGEF YFLFVRVVSS
NGETQSTSAF PVSIEAGNID TSPSLTLDDA RKYRDTIYKT DQQLTVTAHY QAGDGNTVTS
EQGGVRFYLR ELDANFGLIN DIIIEDASAI GQQVGAATAT FSLADLTPSA ALPAGHFYYL
FAVFNSTNGD KYNIPGVFPI RIEQEVSELS LTFSEPNLYR STDYEVGGSL AVSVDFDMGT
GNAVSDELGG IRFFLRHLRE DYSMVKDIIL EDANAIGQQS GSASVTFSLA NIAASDALPA
NDFYFLYVLV KSTDGATQDL AVQRINIVSP ALVGDYDLDG DVDINDIQSL IVAIHMRQSI
DLSFDMNSDG TVNLLDTRLL MNACTRTRCA P
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