Gene Patl_2340 details

Gene Information

• Locus tag: Patl_2340
• ID: 4172494
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 2846832
• End bp: 2848784
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638055349
• Product: alpha amylase, catalytic region
• Protein accession: YP_661911
• Protein GI: 109898656
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTTAC CGTTGTCATA CATGCTCTCA TATTCTTTTA CTCGCGCGTG GAGTGTGCCT 
CTTGTAGTGC TTACTAGTAG TTTATTTGCC TGTTCGCATG AATCGGGTAA GCGAGATGAA 
AACGTTCAAT ATAAGGGGGG CGTCGCAGTG GCGAACATGA CGCACGAGCA CGTGAAGCCA 
GTGGTGTACC AGGTGTTTAC CCGGTTATTT GGCAATACCA ATACCACCAA TAAGCCATGG 
GGCACCATTG AAGAAAACGG CGTTGGGAAA TTCAGTGATT TTACCGATGA AGCCCTGCAA 
GGCATAAAAG AACTCGGCGT CAGTCATATT TGGTATACGG GCGTACCCCA TCACGATGTG 
ATCACCGACT ATAGCGAGTA CGGTATTTCA AATGACGATC CCGATGTGGT TAAAGGCAGA 
GCGGGCTCGC CATATGCTGT AAAGGATTAT TACACGGTTA ACCCAGATTT GGCAGATGAT 
CCAGCAAACC GGTTGGCAGA ATTCGAGGCA CTGATAAAGC GCACGCATAA AAACGGCATG 
AAAGTCATCA TTGATATTGT GCCTAACCAC GTGGCAAGAA ATTATCAATC GCTGGCAAAA 
CCTGATGGTA TGAGTGATTT CGGTGAAAAG GATGATGTAA GTCTTGAATA TGCGCGAGAT 
AACAACTTTT ATTATGTCGT TGGGCAAGAT TTCACGGTGC CAAAAGCCCC TCAAGGATAT 
CAACCTTTAG GCGGGGAAAC CCACTCGTTA GCTGACGGGG AATTTAAAGA ATCACCCGCA 
AAGTGGACGG GCAATGGTTC ACGCAAAGCA CAACCTGATG CCAATGATTG GTATGAAACA 
GTGAAAGTTA ATTACGGCGT TAAGCCTGAT GGGAGCTACG ATTTCGCCAC GCTACCCGCG 
CAATATGCCG ACAAAACGGC CGATGAACAT GTGGTGTTCT GGACAAATAA GAGTGTGCCG 
GACTCATGGA TTAAATTTCG TGATATTACC CAGTACTGGT TGGCAAAAGG TGTAGATGGG 
TTTCGATACG ACATGGCTGA AATGGTGCCA GTGGCGTTTT GGAGTTATCT AAATTCGCAC 
ATTAAACACA CCAATCCGGA GGCATTTTTA CTGGCTGAAG TGTACGATCC GACTAAGTAT 
CGAGAGTATA TTACTCAGGG AAAAATGGAC TTCTTGTACG ATAAAGTCGG CTTTTATGAC 
AGTTTAAAAG GGGTCATGCA AGGTCAATTA CCCGCTTCTG TTATTACAAA AGCGCATTCA 
GAAGTAGCGG ATATAGAGAT GCATATGCTG CACTTTTTGG AAAATCATGA TGAGCAGCGC 
ATCGCTAGCC CTCAGTTTGC TGGCAGCAGT GAATTAGGAA AGCCGGCATT AGTCGTATCA 
GCCTTAATAA GCCGCGCGCC GACACTCATT TATTTTGGCC AAGAAGTGGG GGAAGATGGC 
AGTGAAAATA TGGGCTTTGG TTCAGCCTCT CGCACCACCA TTTTTGATTA TGCTGGCGTT 
CCAGCGCATC AACGCTGGAT GAACCAAGGA AAATTCGACG GTGCGATGTT AGCCCCAAGC 
GAAAAAGCCC TCCGGGATTA CTATCGCCGG GTGTTACGTA TCTCAGCAAG CCAAAGCGCG 
ATGGCGGGGC CCTATGCGGA CTTGCATTCA GTTAATCTTA ATCAGAACAA CGATAATGAT 
GAAGCAACAT ACAGCGAGTC TATTTACGCA TTCAGCCGCT TCGATGACGA GCAAAAAATA 
GTGGTAGTCA GTAACTTTAG TCAAGGGGGG AAACAGTTCG AATTAGTGAT CCCCGAAAGC 
TTAATTTCTC AATGGGGGCT ACCTGATGGC GAATATACGA TGTTCGATTT ACTCAGTGAG 
CAAAAAATGA ATATTAACGT GGAAAATCAA AAAGGTCGTA TATCAATGAC GCTAGGATCG 
TTACAATCTG TGGTACTGAA CCTCGTGAAG TAA 

 

Protein sequence

MRLPLSYMLS YSFTRAWSVP LVVLTSSLFA CSHESGKRDE NVQYKGGVAV ANMTHEHVKP 
VVYQVFTRLF GNTNTTNKPW GTIEENGVGK FSDFTDEALQ GIKELGVSHI WYTGVPHHDV 
ITDYSEYGIS NDDPDVVKGR AGSPYAVKDY YTVNPDLADD PANRLAEFEA LIKRTHKNGM 
KVIIDIVPNH VARNYQSLAK PDGMSDFGEK DDVSLEYARD NNFYYVVGQD FTVPKAPQGY 
QPLGGETHSL ADGEFKESPA KWTGNGSRKA QPDANDWYET VKVNYGVKPD GSYDFATLPA 
QYADKTADEH VVFWTNKSVP DSWIKFRDIT QYWLAKGVDG FRYDMAEMVP VAFWSYLNSH 
IKHTNPEAFL LAEVYDPTKY REYITQGKMD FLYDKVGFYD SLKGVMQGQL PASVITKAHS 
EVADIEMHML HFLENHDEQR IASPQFAGSS ELGKPALVVS ALISRAPTLI YFGQEVGEDG 
SENMGFGSAS RTTIFDYAGV PAHQRWMNQG KFDGAMLAPS EKALRDYYRR VLRISASQSA 
MAGPYADLHS VNLNQNNDND EATYSESIYA FSRFDDEQKI VVVSNFSQGG KQFELVIPES 
LISQWGLPDG EYTMFDLLSE QKMNINVENQ KGRISMTLGS LQSVVLNLVK