| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2329 |
|---|
| Symbol | |
|---|
| ID | 4172483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2834121 |
|---|
| End bp | 2835560 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055338 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_661900 |
|---|
| Protein GI | 109898645 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.371241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCTC TATTTCCTTC TTTATCAAAA CTGCCACTGA CTACGGTAGC GCTTATTGTA
GTCTGTGCAG GCTCATTTAT TGGTCCTTTG GGCATGGCGT CTGTCAATAT TGCGATCCCG
GATCTTGCCG CTGAGCTTCA AGCCAACGCC AAAATGGTCA GTTGGCTGCC CACTATCTTT
TTACTCGCGA ATGTCGCGTT GATGCTGCCT TTTGGCAAGC TGGCGGATAA TTACGGGCGC
AAGCGCATTT ATAGCTATGG TCTGGTGCTT AATGTTATTT CGTCCACCAT GTGCGCTTTG
GCATTTAATA TTGAATGGTT ATTGTTTTGG CGATTCATGC AAGGCGCCGC CGCGGCGATG
ATATTCGGTA CCGGTGTGGC TATTTTGACC TCGGTTACCC CAGCAGAAAG ACGCGGATTC
GCGCTAGGGA TAGCGGCAGC CTGCGTATAC ATAGGATTAA CTGTCGCCCC AGCGGTTGGC
GGCTGGCTCA CAGAGTTATG GGGTTGGCGT TCAGTATTTT TATTTCAAGT GCCTTTAGTC
GTTATGTTGC TGGTACTCAT CAAAATGCGT ATGCATGGGG AATGGAAAAA CGAACGTAAA
GCGAAATTTG ATTGGCGAGG CTCGGGGATT TTCATTATTG CTGCCACATG TCTCGTTTTT
GGGTTAAGCC AATTACCTTC CGTTCTGGGC TTTTTATTGC TGGGTATAGC ATTGATTTTT
ATGGTCTGGT TCGTGGTTCA TCAGTCAAAA CGGGATCAAC CTCTGATACG GGTACAGATG
TTTAAGGAAA GCCGAGTATT CTCTATGTCT TTGGCCACGT CACTACTGAT GTATGCCAGT
AACTATCCCC TAACCTTCTT GCTCAGCTTG TATCTGCAAT ATGTGAAAGG GTTTAGCCCG
TCTGAATCTG GGCAAATTAT CTTATTGCAG GCAATGGCCA TGGCATTTTT AGCGCCACTG
TCGGGTAAAC TATCAGATAA GGTTCAGCCC AGATTACTCG CGACCACAGG TTGCGCTATT
GTGGCGTGTG GCTTCTTTAT TTTAAGTCGA ATGGATATTG ATACCCAAGC TTGGTATATC
GGCAGCTCAT TGCTGCTTGT TGGTATTGGT TTTGGTTTGT TCTCTACCCC TAATAACAAC
GCCATTATGG GCGCTGTGCA CAGTACCGAG TTGGGCGTGG CGTCGGCATC ATTAAATTTA
GCTAGGACCA TAGGTAACCT TGTTGGCATG AGCATGGTGA ATTTGTTGGT GCACCATTAC
ATTGGCGATG CGCAAATCGT GCCTCAGCAG TACCCAGCAC TATTACAGAC GGTGCTTGTC
GCGTTAAATA TATCGTTCGG GTGTGTGGTT ATCGCTTGCA TCATATCCGG CTTTCGTGGG
CGAGAAGCAA AACCTGACAC CCCTATCACA GTAAACGACA AAGATGAACC GGCCCCCTAG
|
|---|
| Protein sequence | MASLFPSLSK LPLTTVALIV VCAGSFIGPL GMASVNIAIP DLAAELQANA KMVSWLPTIF
LLANVALMLP FGKLADNYGR KRIYSYGLVL NVISSTMCAL AFNIEWLLFW RFMQGAAAAM
IFGTGVAILT SVTPAERRGF ALGIAAACVY IGLTVAPAVG GWLTELWGWR SVFLFQVPLV
VMLLVLIKMR MHGEWKNERK AKFDWRGSGI FIIAATCLVF GLSQLPSVLG FLLLGIALIF
MVWFVVHQSK RDQPLIRVQM FKESRVFSMS LATSLLMYAS NYPLTFLLSL YLQYVKGFSP
SESGQIILLQ AMAMAFLAPL SGKLSDKVQP RLLATTGCAI VACGFFILSR MDIDTQAWYI
GSSLLLVGIG FGLFSTPNNN AIMGAVHSTE LGVASASLNL ARTIGNLVGM SMVNLLVHHY
IGDAQIVPQQ YPALLQTVLV ALNISFGCVV IACIISGFRG REAKPDTPIT VNDKDEPAP
|
|---|
| |