Gene Patl_2325 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2325 
Symbol 
ID4172479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2828902 
End bp2830371 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content46% 
IMG OID638055334 
ProductNa+/solute symporter 
Protein accessionYP_661896 
Protein GI109898641 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00258865 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCA GCATGTTGTT CATTGTTTTA CTTTATGAAA TTGTCACTAT CTGCGGCGTC 
GCCCTTTGGT TGAAACGCGG AAAAAGTCAA TCCACGCATA ATGACAGTGA GTTTGCACTA
GGTGGTCGCA GCCTACCTGT GGGAGTGGTT GCGGCCACCA TGGCACTGAC CGTGCTGGGT
ACAGCACATA TATTAGGCGT GTTTGAAATG GTTTGGGGAG TGGGTGCAGC TGCTATTTGG
TTTAGTATCG CTCATGTAAT TTTACTGGTT GTGGTGTGTT ACAGCACTGG GTTGTGGGTG
CGCCGTCTTA GAGTGACAAC AGTGCCAGAA CTGCTAGAGC ACCTTTTCGG CAAAGGGATC
AGAGTGCTCG TTTCCTGCGT TATGGCCGGG ATCATTTTTG GTATTCTAAC CATAGAGACT
CAAGGGCTTG GCATCATCAT TAATGCGATG ACAGGCTGGG GTATCACCAA TGGGGCCATA
GCGGGTGGGG TTATCGGCAT ATTCTACGTT GTGCTAGCGG GTATGAAAGA AGTCGGTTGG
ATCAACCTCA TCAATGCGGT TGTTATGTAT GTCGGGCTTA TTTTAGCCAC AATTTTTATG
GCCTTGCGTC TACCTGGCGG TAATTTTGAT TCAGTGGCTG AGCATTTTGT ATCACAAGAC
ATGGATTACA TGATATCCGT TTTTGGCAAC TCACAAATTT TGATGACCTT TACCCTGGGC
ATGGTGGTTG CGGTACTGTT TAGCCAATCA GTGAATCAAA TGCTATTACA AACGGCCATG
TCCGCCAAAG ATGAGAAAAC GATTAAAAAA GCACTGTGGA TAGCAGCGCC CGTTAATGGT
TTATTTGGTG TTTTTGCAGT GGTGCTGGGC CTTACCGCGA TGACTATTCC TGAATTTGCC
GAACTCGGGC CGAAAAAGGC CGCCACCCAA ATGTTAGTAG AATACCTTCC TCCTTGGTTA
GGAGCATTAC TGTTAGCGTC ATTTCTAGCA GCCATTTTAT CGACTTTCGC TATGACAGCA
CTCAGCCCAG CCACTATTTT TAGTAATGAT ATTTATAAGG GGCTATTTAA ACCTGACGCG
ACCGAAGCGC AAATGACCAA GGTGACCCAG ATTGCGATTG TGGTATTGGC CAGTATTGCT
ATCGCGGTGG CATCATTTTT ACCGCCTATA TTAGCCGCAA TGACCTGGTT ATTTGCCTGG
TTAATACCCG TATTCTTCAT CATCATCTAC GGCTTGTTCT GGCAGCGCAG CGCACTGGCG
GCACTCATTA CATTGGTCAC CGTGTGGGCG GGCAATTTTT TATGGTCTTT TTCAGATATT
GCTTTGAACC TTGGATTACT CAAGAGCAAT GCAGTTATGG CGTTGACCGC CTCTATCGCA
GTGGGATGTG TGGCAAATCT TCTGATTAAA GGTGAAAAAG CTTACTTCAA AAGCCAAACT
TACCTTGACC TAAAAACAAC AAGTAATTAA
 
Protein sequence
MKTSMLFIVL LYEIVTICGV ALWLKRGKSQ STHNDSEFAL GGRSLPVGVV AATMALTVLG 
TAHILGVFEM VWGVGAAAIW FSIAHVILLV VVCYSTGLWV RRLRVTTVPE LLEHLFGKGI
RVLVSCVMAG IIFGILTIET QGLGIIINAM TGWGITNGAI AGGVIGIFYV VLAGMKEVGW
INLINAVVMY VGLILATIFM ALRLPGGNFD SVAEHFVSQD MDYMISVFGN SQILMTFTLG
MVVAVLFSQS VNQMLLQTAM SAKDEKTIKK ALWIAAPVNG LFGVFAVVLG LTAMTIPEFA
ELGPKKAATQ MLVEYLPPWL GALLLASFLA AILSTFAMTA LSPATIFSND IYKGLFKPDA
TEAQMTKVTQ IAIVVLASIA IAVASFLPPI LAAMTWLFAW LIPVFFIIIY GLFWQRSALA
ALITLVTVWA GNFLWSFSDI ALNLGLLKSN AVMALTASIA VGCVANLLIK GEKAYFKSQT
YLDLKTTSN