| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2319 |
|---|
| Symbol | |
|---|
| ID | 4172473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2822118 |
|---|
| End bp | 2824415 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638055328 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_661890 |
|---|
| Protein GI | 109898635 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000203975 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGAA TTAATCAAAT AACAGCGAGT TTATTGACGG TTTTTGCAGG CGCTATCTCG
CCGATTGCGA TTGGCCAAAC ACCAGACGTT GAAACGCAAG GTGGGCCTGC ACTAGAAGTG
ATTGAAATCA CGTCTCAGAA GCGGGTACAA ACGTTACAAG AAGTACCTGC CACGGTAACC
GCTGTTTCTG GCGCCCTGCT TGATGAATAT GGCATCGATG ACTTGTTCGA GATGGCGGAT
TTAGTGCCGG GCATGGTGTT TTCTCGCGCG CCTGATGACG GCTTAGCGCT GACTTTGCGC
GGGTTAGGCA CGCCTGCTCG CACACAGTCT TTTGATCAAT CGGTTGCCTT ATTTCAAGAC
GGTATGTTCG TTGGAAAAGG GCGTATGTAC TCAGCGGCGT TTTTTGATGT AGAGCGCATT
GAGGTCATTA AAGGTACGCA AAGTACGCTA CTGGGTAAAA ATACCAGTTT GGGCGCCATA
AGTGTTATTT CTAAAAAGCC CAGTGATGTG TTTGAAGGGA ATATAAAGGT GGCTCGGGAA
TTCGTAAATG ATGGTTGGAC GGTCGATGGT GGGCTGGATA TTCCATTGGC TGATAATTTT
AGTGTGCGCG TTGCTGGCCA TTATGTGGAT CAAAACGGTT GGGTTGAAAA TCTGGCCACT
GGGCGAGACG TGCCTGAAGA TAACGACACA GGTCTGCGCA TTACAGCGTT GTATGAGCCC
ACAGATTCAA TCATTGTGAC CGGGGTTTAT CAACATTCAG ACAGTGAGCG CATCGGCAAC
GGTTATCAGT TTGTGGATAA CGGCGATTAT TTCAGCGACG ACGTGTTGGC CGTCATCGGT
GAAGCGCAAC TCGATGACAC CAAAAGCGCG GTGTGTACAC AGTGCCCCAA TGAAGAGAGT
TATCACGATA CCACCGTTGA TTCCTATAAT TTAACCGTTG AAAAAAGTCT GGATGATTTT
ACGCTAACCT CAATTACCTC TTACGCTAAA TACGACATTC TATTTTATGA CGACTTTGAT
TTTGGCAATG CCTTTGACGA GTTGACTTAT GTCACTACAG GTGAAGTTGA CTATTACAGC
ACGTACTTTA AACGAGCAGA AACCTATGAT CAGTTTTCAC AGGAATTTCG GTTAGCGTCT
GAGGGGAGAG ACGACTTCGA TTACATGATG GGTCTCTTTT ACTTTGAGAG CGATTGGGAT
TCTTTAGAGG AGCAATTTTA TAACACTCCT AACTTTCCGC CGGATAACGC AGGGCAGTTG
TTCAATGGGT CTTTCGGCAA TGATTTCAAA CAGCAAACAG ACACGCTGTC TGCGTTTATT
CAATCAGATG TCTATCTCTC TGAAAAGTTA ACGGTATCTG GAGGTTTACG TTACACGGAT
GAAAGTAAAG ATGTGCAGTT TGATCGCGTT CAAGGCGAGC TAGCTACGCT TTGGAATACG
GTGGTAAATC CTCCGTTTGA GTCTGACTTA ACATTTGATG ATAGTTTTTT AAACGGTAAT
GTCAGCGTGA AATACGAATG GTCTGATAAT ACCGTTGTTT ACAGCTCTTA TGGGGTAGGG
AGCAAGACAG GGGGATTCGC AGAATCTGCT GAAGTGAGCA GTGCCAATCC GTCGTTAAAT
GTTGAAGATG GCGGGGCGCG AGTGGCAACA GAAGAAACAC ATACGTATGA AGTAGGGTCG
AAGATGGTGT TACTAAACAA CAGCATGAAC CTTAACATTG CTTTATTTTA TACAGACATT
GATGATTTTC AAGAAACCTC ATTTTTAGTC ACAGGCGCCA GTGCCAGTTT TATTACTCAA
AACACAGATG TGAAATCGAA AGGGTTTGAG ATTGACAGTA AATGGCAAGT TACCCAAGAT
ATCCAAATAA ATGGAGCACT CGCCTTTGCT GATTCAACGC ACAAAGAGGA TGGCAGCGAT
TTAGCGCAAG CGCCAAAGTG GACAGGTAAT ATTGGTTACT TGTACACCAA TGAACTCGAG
TCTTGGGATA TGCATCTGCG TTCGAGCGGC TCTGTGCGCT ACCGAGATAG CATGTTCAGT
CAAATAAATG AAACTTACGC GTCTGATAGT TTAACCACGC TAGATTTTAC CCTAGGTTTA
TATTCTAACG ACGATACTTG GGAAGTGATG TTGGTAGCGC AGAATCTCAC AAATGAACGG
GCGAGTGATT TTAGCGGACC GCCGGCGGCA CCCATAGGTG CTATTTTAGG TGCGCCTACG
GGCGATCAAG GTATTACCTC GGAAACATTG AATACGCAGC GTACGATTAA ACTGCAAATG
AGCTACCATT TCTTTTAA
|
|---|
| Protein sequence | MIRINQITAS LLTVFAGAIS PIAIGQTPDV ETQGGPALEV IEITSQKRVQ TLQEVPATVT
AVSGALLDEY GIDDLFEMAD LVPGMVFSRA PDDGLALTLR GLGTPARTQS FDQSVALFQD
GMFVGKGRMY SAAFFDVERI EVIKGTQSTL LGKNTSLGAI SVISKKPSDV FEGNIKVARE
FVNDGWTVDG GLDIPLADNF SVRVAGHYVD QNGWVENLAT GRDVPEDNDT GLRITALYEP
TDSIIVTGVY QHSDSERIGN GYQFVDNGDY FSDDVLAVIG EAQLDDTKSA VCTQCPNEES
YHDTTVDSYN LTVEKSLDDF TLTSITSYAK YDILFYDDFD FGNAFDELTY VTTGEVDYYS
TYFKRAETYD QFSQEFRLAS EGRDDFDYMM GLFYFESDWD SLEEQFYNTP NFPPDNAGQL
FNGSFGNDFK QQTDTLSAFI QSDVYLSEKL TVSGGLRYTD ESKDVQFDRV QGELATLWNT
VVNPPFESDL TFDDSFLNGN VSVKYEWSDN TVVYSSYGVG SKTGGFAESA EVSSANPSLN
VEDGGARVAT EETHTYEVGS KMVLLNNSMN LNIALFYTDI DDFQETSFLV TGASASFITQ
NTDVKSKGFE IDSKWQVTQD IQINGALAFA DSTHKEDGSD LAQAPKWTGN IGYLYTNELE
SWDMHLRSSG SVRYRDSMFS QINETYASDS LTTLDFTLGL YSNDDTWEVM LVAQNLTNER
ASDFSGPPAA PIGAILGAPT GDQGITSETL NTQRTIKLQM SYHFF
|
|---|
| |