| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2310 |
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| Symbol | |
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| ID | 4172464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2810713 |
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| End bp | 2812869 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055319 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_661881 |
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| Protein GI | 109898626 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATTGGA GGAAACCAAT AGCACGACGA AATGCTGTTT TTTTATGCGC ACTGTTATGC
CATGGCAATG TCATAGCTCA AGTCGGTGTT AACCCGTTTC AAGTAGACCA CATTCCTACT
TATACTGAAA TCAATCCGCT TAAACGTGCT ATTGAGCTTG CCCGTAAGCA AGGCGAAATG
AACAAAGCCG AAGCACTCAC TGAGCAGTTT CAGCAGCTAG CGGTTAGCAA AAACGACGCC
TTAGCACTCG CTGATGTGTA TTTTGAACAA GCAAGGAATA CCATGGAGCG CAATCATTAT
GCGCCCGCAC ATGACTTGCT CAATAAAGCC ATCAATGTGT ATCAAGAACA AGGCGATCAG
GCCGGACTCG CTAAGGCATA TCGGCAGCGC GGATTAACCT ATCGCTACCA ATCTAACTAT
CCTCAGGCTT TAGAATACAT CTATTCAGCT ATGCAAATCA GTCAGCAGCA AAATGATACT
TCTGCCGTTG CTTCTACCTA CAACAGTATA GGGCTTGTGC TGGAGAAGAT GGGACTGCTA
GAAGGTGCAG CCCAAGCACA TCAAAGTGCA TTAGAAATGC ATCATGAGTT GGATGATAAA
AATGGTATCG CCAGCGCCCT GTACAACCTT GGTGACCTTC GACGCCTGAT GGGAGACGAC
AAACTCGCCC TGACTTATTT TCAAGACGCT CTTAAAATAG ATTTAGCCTC TGAGGAAAAG
AAGTACATTG CTTATAGCCA CAATAAAGTC GGCTTCCAGT TCATTCAACT CGCCGATTAT
GAGCAAGCTA GATATCACTT AACAGAAGCT TTGACGCTCT TTCAACAGAT TCAAGCGCCA
AGAGACACAG ATTGGGCAAT ATTGTCCATG GCTACCTTAG AAATGAACTT GGGTAACTTA
CCCCTTTCTC GTACCATGTT AGACGGTGTT ATCGAGCGAG CAATTGACAA GCAGTATAAG
AGCTTATTGG TTGATGCTTA TCGCACATCT GCGCAATTAG CCCTACTTGA TGAAGATACT
GAATTGGCAT TGCAGCACAT TGATGCGGGT GTGACACAAG CCAAAAAGAA TAATGAATCC
CATGACGAAG CGCTGCTAGA AGCGTTACGG GTAAAAGCGT ATCTGCAGGA AGATGCCCTC
AGGCAAGCCT TAGATGCTTT GCTTTATCAA AAAAAGTTAG ACGATGAAAT ACTCAACACC
ACTCGAATCA AAACTATAGC GACACTGCAA TCTCAAACAG AGTTCGTGCG CCGTGCCCAA
CAAATTAAAT TATTGGAAAA AGAACAGGCG TTAACTCAAG TCACATTGAA GCAAGCGCAA
TGGAGCAGAA ACGTTTGGCT AGCGTCGATT GTCGTCAGTG CCATTTTATT TGCCCTTGTT
TACGGTCGTA TTTCCCAGCG CAGATTAAAC AAGCGACTTA GCGAAGAAGT GGCAATTCGT
ACACTTGAAT TGAGCCAGAA AAATGTCGAG TTACAAGCCG CTTATCGGGA AATGGAAGCC
ATTAGCCTAA CCGACAAGCT TACTGGCATT AACAACCGGC GCTTTTTAGA GAATCACATA
GAAACAGATT TGGAAAAAAG CCAACGAATT TATGATGATT GGCGAGATGG TAAAACACCC
ACACCTCACC AAGGGGATAT TGTCGTTTTC ATGATTGATA TGGATCACTT CAAGCGTGTG
AACGATGAAC ACGGTCATCA TGTTGGTGAC GAAGTGTTAC GGCAACTTAC AAAGCGCCTA
GCGCGCGTGT TTAGGCAGTC AGATTATCTA GTGCGCTGGG GCGGTGAAGA GTTTGTTGGG
ATCGCGCGTT TTATAGATCG TAGTGACGCG CCCCTGTTGG CTCAGCGCTT ACTTGATGAA
GTCAGCGCTA GTCCATTTCG TCTTTCAGAT AAAGCACTGT CTCACTACAC CTGCTCTATC
GGTTATGTGT GTTATCCGCC GATTTTAGAA CACAGCCAGC AAACGGATTG GAAAACCTTG
ATCGCCCTAG CCGACGGATG CTTATATCAA GCCAAAAAAA GCGGACGTAA CGCCTGGGTG
GGCATTGAAA AAGTTCACCA ACCGACGTTG GACCTTATTG AGCTGTGTTC GCAATATTTT
GAGGACTCGG CTCCTACTAA CAAGATAACC GTGTTGACCT CGCAAAAATC CCACTAA
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| Protein sequence | MDWRKPIARR NAVFLCALLC HGNVIAQVGV NPFQVDHIPT YTEINPLKRA IELARKQGEM
NKAEALTEQF QQLAVSKNDA LALADVYFEQ ARNTMERNHY APAHDLLNKA INVYQEQGDQ
AGLAKAYRQR GLTYRYQSNY PQALEYIYSA MQISQQQNDT SAVASTYNSI GLVLEKMGLL
EGAAQAHQSA LEMHHELDDK NGIASALYNL GDLRRLMGDD KLALTYFQDA LKIDLASEEK
KYIAYSHNKV GFQFIQLADY EQARYHLTEA LTLFQQIQAP RDTDWAILSM ATLEMNLGNL
PLSRTMLDGV IERAIDKQYK SLLVDAYRTS AQLALLDEDT ELALQHIDAG VTQAKKNNES
HDEALLEALR VKAYLQEDAL RQALDALLYQ KKLDDEILNT TRIKTIATLQ SQTEFVRRAQ
QIKLLEKEQA LTQVTLKQAQ WSRNVWLASI VVSAILFALV YGRISQRRLN KRLSEEVAIR
TLELSQKNVE LQAAYREMEA ISLTDKLTGI NNRRFLENHI ETDLEKSQRI YDDWRDGKTP
TPHQGDIVVF MIDMDHFKRV NDEHGHHVGD EVLRQLTKRL ARVFRQSDYL VRWGGEEFVG
IARFIDRSDA PLLAQRLLDE VSASPFRLSD KALSHYTCSI GYVCYPPILE HSQQTDWKTL
IALADGCLYQ AKKSGRNAWV GIEKVHQPTL DLIELCSQYF EDSAPTNKIT VLTSQKSH
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