Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2276 |
Symbol | |
ID | 4172430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2769822 |
End bp | 2770832 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638055285 |
Product | TonB family protein |
Protein accession | YP_661847 |
Protein GI | 109898592 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000987559 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTGCTG CTACACAACA AAACACTGAA CAACAGTGCA TGGCCAGTCA ATCACAAGGC ATCATTGGTT TACTTTCGCC GAGTTTTCAT ACTAGCGGGC ATAAACGCCA GTGGTTGGTA GCGATCGCTG TAGCCGCCGC ATTGCACGCC AGCGTATTTG CTGCCCTTTC AATTACCCCC GAAGAAGTAC AGGGCAGTGC TATGGGAGAA GGACAAGACG GTATTGAAGT CGGTTTAGGG ATGCTCGGAT CGTATCAAGA TCAACAGCTT GTTGAGTCTG AACAATTAGA AGAAACCCTT GAGGCCCATC AAGAGCCAGA GCCAGAGTCT GAACCATTGC CTGAACCAGA GCCGGTAGTT GAGCCAGAGC TAGTAGAAAA ACCGCAGTCC ATCATTGAGC CTAAAGTAGA GCCAGTCATT GAGAAAACCG ACCCTGAGCC AAAATTGGAC CGCATTGACG TACCTGTAAT CGAGCAAGTT TCGGCTGAAA ATGCGCTGCA AAAAATAGTC GAACCTAAAG ATGAGGTTCC TGAATCGCCA GTAAACAAAA CCCAGGTAAC AAAGACCGAG ACAAACCAGC AAGACGTGAC CAAGTCGACT ACCGAAGTAG CACAGCAAAA TGCACCAGCA CCGACTGCAC AAAAAGCCAC AAATCGTGGT ACGGGCAGTG CTAGCTCAAC ACGCTCCGGT GGCCGAGCTG GGAATGCGAA TGACTTCTTC GCGCAGTTGC AGGCGCATTT GCGCAAGTAT AAAACCTACC CAAGAGATTT AAAAAAGCAA AAAATTGAAG GCGTGGTGCA GTTGCAATTC ACCATCGATC ACGATGGCTA TGTATTGGCC TCTAGCATCA AAAAAAGCTC AGGCTCAGCT GAACTGGATA AGGCTGCGCT TGATATGTTG CAAAAGGCCA ACCCTTTGCC ACTTGTACCC GATTCAATTA AACGAGAAAA GATCACGCTC GTGATCCCCA TTGAATATTC ATTAATCACC AACTCAGCAT TTAAGGATTA G
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Protein sequence | MRAATQQNTE QQCMASQSQG IIGLLSPSFH TSGHKRQWLV AIAVAAALHA SVFAALSITP EEVQGSAMGE GQDGIEVGLG MLGSYQDQQL VESEQLEETL EAHQEPEPES EPLPEPEPVV EPELVEKPQS IIEPKVEPVI EKTDPEPKLD RIDVPVIEQV SAENALQKIV EPKDEVPESP VNKTQVTKTE TNQQDVTKST TEVAQQNAPA PTAQKATNRG TGSASSTRSG GRAGNANDFF AQLQAHLRKY KTYPRDLKKQ KIEGVVQLQF TIDHDGYVLA SSIKKSSGSA ELDKAALDML QKANPLPLVP DSIKREKITL VIPIEYSLIT NSAFKD
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