| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2269 |
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| Symbol | |
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| ID | 4172423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2759545 |
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| End bp | 2762418 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638055278 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_661840 |
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| Protein GI | 109898585 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.975184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCATTCGA ATTCCTTACC GCCAAGTGCG GACAATCCTC CACATTATGC AATAACGCCC
CCATCAGCAC GTGACCAAAA CCCCGAAGAA GCACGATTCA TTAGCCTAAG CTGGTTTGGT
CGAATTTTTT CCCCGCTACA AGTAGATCTT AAATTCGATG AGTCCGGTGT GTATTTTCCA
GAAGGTGCCA GACTATCAAA AGAATTAAAA TCACTTTTGG GTGCTAACCA TATAGGCAGC
GGTGAAAAGA AATCTGTCAC CTTTTTATCT TGGCAACATT TTGATATTCC ACCTGCCTTT
GAGTGGCGCT GGCTTGGCGC TACGATGATA TTCCAGGTAA ACGCATTGGC TCATGAACTG
CATTTTTTGG GATACCGTAG TAGCCAATTT CAAGCAGGTC AGATTCAGGC TGAGTGGGGG
AATTACCACC AAAGCAGATT ATTGCAGTTG GTGAATAACA TAGAAAATGC GACGCAAGCA
AGGTATCTCA GGCATTCACA CGTCATCGCC ATTAAGCAGC GCGTAGCGCT TGAGTATCCA
CGATGGCACA CTTGGGCGCA GAATGCTCCT TTGGACAGTA CCGTAAAAGA GGCTGTTATA
AAGCTAAAGG CAATGCATCA ATGGGAGCAA GCGGATATTG CGGCAATACG AGAAGGCTAC
ATTCAAAAAC AACTTCATTT GCATGCAGAT TTTTTTCAGC GAGTTGAGTC AAACCCTTTA
ACAGACAAAC AACGACGCGC CTGTATTATA GATGATGACA ATAATCTACT ACTTGCTGGA
GCAGGGACCG GAAAAACCAG TGTAATGGTC GGCCGAGCAG GCTACTTGCT AACGAGCGGT
CAAGCGAAAC CAGACGATAT TTTACTACTG GCTTACGGTC AAAAAGCCGC CACTGAAATA
GACGAGCGCA TTAAGCACAA GCTAGACGGA CAAAGCATCA AAGCCAGCAC TTTTCACAGC
TTGGGACTAT ACATTATTAC CAGCGTCGAA GGTAAAAAGC CGACCTTATC CCCATGGGTG
AATGACGAGC AAAAGAAAAA TAAATGGGTA TTGGCAAGCC TAGAAAATCA GCTGCAAAAT
GTATCCTATC AAAAACAAGT GATTGAATAC TTAAGCAACT ATTACTATCA ATCAATGAGT
CCGTTCGATT TTGACGCTTT ATCTGATTAC TCCCGTTATT TGAATGAAAA CAATGTGCGT
ACATTGAAAG GGGAGCCGGT AAATTGTTTC GGACACCTGC ACATTGCTAA CTGGTTGTAT
CGAAATGGCA TTGAATATCG TTACCAAGCT AAATATGCTT TTGACGTTGA AAATAAGCAT
ATCGGTGGGA ACAGAGCAGA TTTTTATTTA CCACACGCTG ATGTGTATAT CGAATATTAC
GTGCTAGATG ATGAGGGTAA TACACCCAGT TATACCGATA ACAATCGTTA TCAAGCAATG
ATGGAAAATA AACGACAACT GTATAGCTAT CATGGTTCAA GATGTATTGA ACTATTTTAT
TATCAATACG TTAACGGAAA ATTGAACAGC ATACTGAAAC GTTCTGCCAA TAAATTACAG
GTCAAGAACG TTCCTTTATT AAATGAAAAG ATGCTGAACA CGTTACAAAA ATCTAATTAT
TTGAGCGAAC TTGCAATCTT GTTTTGTCAG TTAATCGGCT TATACAAATC AGCTATTTCT
AGTAAGTTCA GTGTAAAAGC TGTGCTGGCC GATATCACCT CAAAGGGCAA AGCGATTGAT
TCTCAGCAAG CACGAATTGC TTTTACTTTG CTGCGGCCTA TATTTCAGCA TTACCAGAAG
CATTTGAGCC AGCACGCTTA CATTGATTTT GAAGATATGA TCAGCAAAGC GATAACGTAT
GTGGAAAAAG GGCATTTTAC AGCACCATGG CGATACATAA TGGTGGATGA GTTTCAGGAT
ATCTCAGAGC CTAGAGCTCG TTTAGTGCGA TCACTAAGAG ACAGCACGCG TTCTGTTAGC
GCGTTACCAA GAAAAAATGA GAGTGTGCCT TCAAGCCGTG AGGTGTTACC GCGCAAACAA
AGTCAATCGG CGTCTATATT TTGTGTTGGC GATGATTGGC AAGCCATATA TCGATTTAGT
GGCGCAGATG TGAGCTTGAC TACGCAGTTT ACCCAGTACT TCGGCCACAG CATTGAAAAT
GTTTTAGACC AGACGTTTCG TTTCAATAAT AGAATTGGTG ATGTGGCCAC TCAATTTATC
AGTCGAAATC CGGCGCAGAT AACCAAGAAT ATTCGCTCTC TCGTTAAAGT AGCGGACCCA
AGAATAAGGG TTCTATACAG TGATACTCGA TTAAACAGCG AGACTCAGTC ATCAAATACT
GAAAAGTTAC TGCACCAAGC GTTAGCTACT TTAGCAGGCA AAGTGGATGA AATATCTGAG
CAACATAATA AGCGCGGGAA GACCGAAAAA ATTAGACCAA CACAGAGCAG CAAGAAGGAT
ACACTGCGGC AGTGCTCAAA GCCTACAGTC TACATTTTAG CGCGTTTTTG GTTTCAACTA
CCGGATAGAG AAGGTCTAGA AGCGCTCAAT AAGCAATACA CTAAGCTACA TATAAAGTGC
TTGTCGTTTC ACGCAGCGAA GGGAAAGGAA GCGGACTACG CCATTATCAC CGGCATGACT
GCAGGTAAGC ATGGCTTTCC GGCAGATAAA GTCACTTCAC CTGTGGTAGA GGCACTTTTA
CCCAAACAAG AAACGTTTAC GTACGCAGAA GAAAGACGCT TATTTTATGT AGCGCTTACT
CGTGCTAAAC ATCACGTTTA TGTCCTCGCT GACATGACCC AAGCGAGCGC TTTTGTCACT
GAGTTAATGA ATGGTACGTA CGATGTTGAG CTTACATTGT GTAATGAAAA TTAA
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| Protein sequence | MHSNSLPPSA DNPPHYAITP PSARDQNPEE ARFISLSWFG RIFSPLQVDL KFDESGVYFP
EGARLSKELK SLLGANHIGS GEKKSVTFLS WQHFDIPPAF EWRWLGATMI FQVNALAHEL
HFLGYRSSQF QAGQIQAEWG NYHQSRLLQL VNNIENATQA RYLRHSHVIA IKQRVALEYP
RWHTWAQNAP LDSTVKEAVI KLKAMHQWEQ ADIAAIREGY IQKQLHLHAD FFQRVESNPL
TDKQRRACII DDDNNLLLAG AGTGKTSVMV GRAGYLLTSG QAKPDDILLL AYGQKAATEI
DERIKHKLDG QSIKASTFHS LGLYIITSVE GKKPTLSPWV NDEQKKNKWV LASLENQLQN
VSYQKQVIEY LSNYYYQSMS PFDFDALSDY SRYLNENNVR TLKGEPVNCF GHLHIANWLY
RNGIEYRYQA KYAFDVENKH IGGNRADFYL PHADVYIEYY VLDDEGNTPS YTDNNRYQAM
MENKRQLYSY HGSRCIELFY YQYVNGKLNS ILKRSANKLQ VKNVPLLNEK MLNTLQKSNY
LSELAILFCQ LIGLYKSAIS SKFSVKAVLA DITSKGKAID SQQARIAFTL LRPIFQHYQK
HLSQHAYIDF EDMISKAITY VEKGHFTAPW RYIMVDEFQD ISEPRARLVR SLRDSTRSVS
ALPRKNESVP SSREVLPRKQ SQSASIFCVG DDWQAIYRFS GADVSLTTQF TQYFGHSIEN
VLDQTFRFNN RIGDVATQFI SRNPAQITKN IRSLVKVADP RIRVLYSDTR LNSETQSSNT
EKLLHQALAT LAGKVDEISE QHNKRGKTEK IRPTQSSKKD TLRQCSKPTV YILARFWFQL
PDREGLEALN KQYTKLHIKC LSFHAAKGKE ADYAIITGMT AGKHGFPADK VTSPVVEALL
PKQETFTYAE ERRLFYVALT RAKHHVYVLA DMTQASAFVT ELMNGTYDVE LTLCNEN
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