| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2257 |
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| Symbol | |
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| ID | 4172411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2743669 |
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| End bp | 2747001 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055267 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_661829 |
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| Protein GI | 109898574 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.371999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTACGT CAACGTTTTC CCTTTTGTTT CGCTTTATTT TCCTGTTGTC CTTTATCACA
AGCGCATTTA GTTATGCAGA CGATGAGTTA ATACCCAGCA TTGAAGAAAT TCAACAACGT
TTAAAAACTG CCTCAGATGC AGCACAGATT TCTGAACAAC AAAAAGTCGA AATTGAAACC
TCGTACCAGC AAGCGATTGA AAACATCCGT GCAACACAAC AATTTGAACA GCAAAGCGAA
AAGTACAAGC AAGCCATTAA AGATGCGCCA AAAACACTAA CAAACATTAA GCAAGCCCAC
GTTAACTTTA CTCCGCCCAC ATTACCCAAT AAGCCTCTTT CACTTCAAAC CCTGGTTACT
TTGTCAACAG ATACCGAGGG TGAGGTCACC AGTGGTCGAG CAAAGGTGTC GGAATTAAAA
GCGGCACTAG ACGATGAGCG GCGTTTACTG TTGCGCCAAA TCATCAGTGA TACACAAATT
GCAATCGATA CTACCAATGC TAATTTAGGG GCCGATGAAA GTGCTAATCC TAGCCAATTG
GCGACAAGCG TAGCACAAGC CACCCAGCGT AAAATGCTGC AAGCCAAGAT CGATTCACTG
AAGCAGCGCC TCGCTTATCG TCCGGATCAC CTCGCCATTC TTGACGCAGA AATCTCGTTT
GAACAAAAAA AACTGAGCGC TCACCTTGAG TTACTTGACG CATTGACCAG ATTACAAAAT
CAATTGGATG AAAAAGAAAA TGCCTCTATG TTGGCTCAGC TTGAAGCAAC TACGGCCTCT
TTAATCAGCG CGCCAAGCAC ACTACAGGAC ATAGCCAAGC AAAATGAAGC ATTAGCGAAA
AAAGCCACAT CATTAACGGA ACAACAAGAC GCCACGAGTC AAAAGCTTAA CGAGATCCAA
ACGCAAATAA ATGAACTGAA TAACAAATTT TCCTCCTTAA ACAGACTCCT TGAGCTTGAG
GTGTACGAAT CCTCAGCAAT ATTTGGTAAT GCGCTGCGAC AAGAATGGGA ATTAGCTTCA
CGCTTCGTTA ATGGTGACGA GTGGATCAAG AAAACGGAGG GCTCATTGGT GGAGAATCGC
GTTGCCATGT TCAGCATTAA TCAACGCCGG GCACCCTTTG ATACCTTGGA AATTAACGCG
TTAATGAATC AAATCGGACA AGATAATGCC CGCTGGAAAG ACGAGGTTAA AAGCTTAGTT
GACCAGCGCA GAGAGTTAAT ATCTCAGCTA AGTTCAATTT ATACCCAACA CGTTGATGTG
TTATCCGTGT TGCTCGATAA ATTGCGCTAT TTAAACGAAC GCACCGAAAC CTATAGCGAC
TTACTTGAAA GCAACTTATT TTGGATACCT AGCGCCACTC CGTTTGATTT AGGAACGATT
GCGGCTGCGG GCACGTCTGC CAGTTGGCTC TTTCGTGCTG AGCACTGGCA AAATGTTTCT
CAGGCAATCA ATGCAAACTT ACAACACAAT CAAATCGGCG TAGTAAGTAT ATTCGTCGCC
TTGATTCTTA CCCTCTTGTT CAGAAAGCGG ATTAAACAAC GTCTCACACA AATAGCCCCA
TTAGTTGGTA AGGTACAAAC TGATGCCTTT CAATATACCC TACTGGGGTT AGCCATTACC
TTTGGGTTAT CTTTGCCGCC TGCGCTATTA CTCTTCGCAG CCGCATTACT TTGCGATGCA
CAATCAGGCT TCGCCAATAG CCTGAGTAAT GCTTTTTTTG TCGGTGGGTT AGTGATGCTC
TACTTGGAAT TTATGCTGCA AATTGTGCGT AAAAATGGAC TGGGGGAAAT CCACTTCAAG
TGGAGTGAAT CGAATCTGGC TTTGCTACGC AAGAATAATC GTTTACTGAT TATTGTCTTT
ATCCCTGTCG TCATCATTAT GACCCTGTTG AACAATCAAG CCAGCGTGGA GATCCGGGAA
GACTTAGGGC AATTTGCGTT GATTATATTG AGCTTTTCTT TAGCTATTGC GGGCACCAGG
GTTACGCGTA ACGCCTACCA GCGTTACCGC ATCTCACAGC ACAGCGCTAA GCGTTTTTCC
TACTTTTTGT ATTCGTTGTT AATACTAGTC CCCGTATTCT TGATCATACT GTCGGCCATT
GGCTATCAAT ACAGCGCTCA GCGCATCCTC GCTTTACTAC TCGAATCTGC ATGGTTGTGT
ACCCTCGCGC TGCTATGCTA CTACACTGCA GAGCGCGCCG TTTCGGTTAA TGCACGACGT
ATCGCACTTG AAAAAATACG CAGTAAACGG GCAGCCTCGA TTGTCGCTAA TGCGCAACAA
GAAGCCGCTG AACAATCCGG TGAAGGCGTA CCCGAAATCA TCGATACCCA AGAACTCGAC
AGACATACAA TAACCGCTCA AACCAAAGCC GTTATCCGCC TAATTATTTG GTTGATGCTG
CTTGCCGCTT TATCTATGGT CTGGCAAGAC ATATCACCCA TCGCCTATTC GTTAGACGAT
ATCGTCATGT GGGAAATTAG CAGCGACGAC CCAAATTCCC CAGCACAACG CATCACGCTA
TGGAGCTGCT TGTTAAGCTT GGCCATACTT GTTATCAGTT TTGTCGGTGT TCGAAACTTA
CCAGGTTTAT TAGAAATGAC TATCTTGGGG AGGTTAAATT TGTCCCCCGG CACGAGCTAC
GCTATTACCA CTATGCTCAA ATACAGCATA GTGATCATCG GGATTATTGT ATCGGTGAAT
ATACTTGGAG CCCAGTGGTC TAAACTACAA TGGCTTATTG CTGCGCTGGG CGTGGGTTTG
GGCTTTGGTT TGCAAGAAAT TGTGGCTAAT TTCGTATCCG GTATTGTTAT CTTGTTTGAG
CGCCCTATAC GCTTAGGCGA TACCATCACT ATTGCCGGTC ACAGCGGCAC CGTAACGCGG
ATCCGTATTC GTGCGACCAC CGTCAGTGAC TGGGACAGAA AAGAGCTTAT CATCCCTAAT
AAAACCTTTA TTACCCAAGA TTTTATTAAC TGGACATTAT CAGACCCTGT CACCCGTATC
GTAATACCTG TGGGTGTTGC CTATGGCAGT GACACTGATA AAGTCGTGTC GTTACTCCTT
CAAGTTGCAA CTGATAGTCA TAATGTATTT GACGATCCCG CTCCCGCCGC TTTGTTTTTA
GCATTCGGGG CGAGCAGCCT AGATTTTGAG TTGCGTGTTT TTGCCCGTGC CGTTGTCGAC
AGAGCCATGG TGACCCATGA GTTACACATG CACATTGAAA AAGCATTTAA ACAGGCGGGT
ATTGAGATTG CGTATCCCCA ACAAGATGTC CATTTAAACG TGTCAGATGC CATCGACGTG
AATGTGCATT CTGACAAACC CGCTATGCCC TAG
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| Protein sequence | MRTSTFSLLF RFIFLLSFIT SAFSYADDEL IPSIEEIQQR LKTASDAAQI SEQQKVEIET
SYQQAIENIR ATQQFEQQSE KYKQAIKDAP KTLTNIKQAH VNFTPPTLPN KPLSLQTLVT
LSTDTEGEVT SGRAKVSELK AALDDERRLL LRQIISDTQI AIDTTNANLG ADESANPSQL
ATSVAQATQR KMLQAKIDSL KQRLAYRPDH LAILDAEISF EQKKLSAHLE LLDALTRLQN
QLDEKENASM LAQLEATTAS LISAPSTLQD IAKQNEALAK KATSLTEQQD ATSQKLNEIQ
TQINELNNKF SSLNRLLELE VYESSAIFGN ALRQEWELAS RFVNGDEWIK KTEGSLVENR
VAMFSINQRR APFDTLEINA LMNQIGQDNA RWKDEVKSLV DQRRELISQL SSIYTQHVDV
LSVLLDKLRY LNERTETYSD LLESNLFWIP SATPFDLGTI AAAGTSASWL FRAEHWQNVS
QAINANLQHN QIGVVSIFVA LILTLLFRKR IKQRLTQIAP LVGKVQTDAF QYTLLGLAIT
FGLSLPPALL LFAAALLCDA QSGFANSLSN AFFVGGLVML YLEFMLQIVR KNGLGEIHFK
WSESNLALLR KNNRLLIIVF IPVVIIMTLL NNQASVEIRE DLGQFALIIL SFSLAIAGTR
VTRNAYQRYR ISQHSAKRFS YFLYSLLILV PVFLIILSAI GYQYSAQRIL ALLLESAWLC
TLALLCYYTA ERAVSVNARR IALEKIRSKR AASIVANAQQ EAAEQSGEGV PEIIDTQELD
RHTITAQTKA VIRLIIWLML LAALSMVWQD ISPIAYSLDD IVMWEISSDD PNSPAQRITL
WSCLLSLAIL VISFVGVRNL PGLLEMTILG RLNLSPGTSY AITTMLKYSI VIIGIIVSVN
ILGAQWSKLQ WLIAALGVGL GFGLQEIVAN FVSGIVILFE RPIRLGDTIT IAGHSGTVTR
IRIRATTVSD WDRKELIIPN KTFITQDFIN WTLSDPVTRI VIPVGVAYGS DTDKVVSLLL
QVATDSHNVF DDPAPAALFL AFGASSLDFE LRVFARAVVD RAMVTHELHM HIEKAFKQAG
IEIAYPQQDV HLNVSDAIDV NVHSDKPAMP
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