| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2253 |
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| Symbol | |
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| ID | 4172407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2738649 |
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| End bp | 2740991 |
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| Gene Length | 2343 bp |
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| Protein Length | 780 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055263 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_661825 |
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| Protein GI | 109898570 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2203] FOG: GAF domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGCCG CGCCGAGACC TTCAAACGAT AAACAACGCG TTAGCGCTTT ACATGAGCTA
AACATATTGG ACACAGTAGC CGAGGAGCGC TTTGACCGCA TCACCCGTTT AGCTGCTCAT
TCTTTTGGTT GTCAGTTCGC GTCAATTTCA TTTATTGATG AAGAACGTCA ATGGTATAAA
TCTGTGGTTA ATTTTCCAGC CACTGACTTA GATCGAAATA TCTCCTTTTG CGCGCATACC
ATTACTCAGG ATAAAGCACT GGTCGTCAAA GACGCTCACC TTAGTGCATG TTTTAAAGAC
CACCCATACG TCGTCAGTGA CCCATTCTTA CGCTTTTATG CAGGAATAAA AATCACTATG
GATGGTTATC ACGTGGGCTC TTTATGTGTC TTTGATACAC AGCCCAAGTC ATTTACTTGC
TCCGATGAAT TGATACTACA AGATTTAGCC AATATGGTTG AAAGTGAGCT GCAGAAAGAA
CAACTGACTC ATGCAGCACA AACGTTACGG CAATATCAGA ACAAATTAAA CGAAACCCAA
AAGCTCACTC GCGTTAGAAA CACCATTCTA GAAAAAATTG TTCACTCTGT ATCCCTTACA
TCCGTGCTAC ATGAGATCGT CAAAGCGGTA GAGCTTGAAT ATCTGAACCA AAAATGCAGT
ATTTTGTTGC TCAAAGATAA AAAGTTGTTA TGTGGGGCCG CACCTTCTTT GCCCAGTTTT
TATAATGACG CGATCAATGG TTTAGATATT GGCATAGGAC AAGGCTCGTG TGGAACAACC
GCCTTTACTG GGGTGCGCAC CGTGGTCGAA GATATCAGTA GCCATCCTTA CTGGTCTGCA
TGGACAGAAC TCGCTGAAAA AGCTGAACTG GGCGCCTGTT GGTCTGAGCC GGTCAAAGCA
TCTGACGGCA CCGTATTGGG CACTTTCGCC ATATATCACG CTTATCCAGC CGCGCCCAGC
ACGGAAGAAT TACAACGAAT TGAACAATTT GCTTACATTA CAAGCATCGC AATAGAACGC
CAGAACAACA GCGATTTGAT ATGGCACCAA GCCAATTTTG ATGAGCTAAC GCAGCTACCT
AATCGCAATA TTATGGGGGA GCATTTAAAA CAAGCCCTAA ATGTGGCGAA GCGCAACCAA
ACTCAAGTTG CTGTGTTGTT CTTAGATCTC GACAATTTTA AAGACATCAA TGATACGCTT
GGTCATAGCG TAGGAGATGA CCTGCTCGTT GATTGCGCCC AGCGCATCAA AGACTGTATT
CGTCATAAGG ATATAGTAGC TAGGTTAGGT GGCGATGAAT TTGTTGTCAT CATAAATGAT
ATTGTAGATT TCAGTGGCCT TGAAAAAACC GCGCAAAAAA TACTCAAAGG CCTATCTAGG
CCTTATCATT TACAGAGTGA AATTGTGCAT ACTAGTGCGA GCATAGGCAT CACTATTTAT
CCTGACGACG CTGATGATGT GTCTAGCTTA TTAAAAAATG CTGATCAAGC AATGTATGGT
GCGAAAGCAA TAGGTAAAAA CAACTATCAC TATTACACCA AAAACATGCG AGACGCCGCA
GTGAAACGAA TGGCGCTAAT AACAGATTTG CGACATGCTA TTGATAACGA TGAATTTTTC
ATTGTTTATC AGCCCATCAT CAATTTACTG GATCAAAGCA TCACTAAAGC AGAAGCGCTA
ATAAGATGGC GACATCCTAT TCGCGGACTT GTGGGGCCTG ATGACTTTAT TCCCGTTGCT
GAAGAAACGG GCCTAATCAT AGATATCAGT GATTGGGTGT TTGAACAGGT ATGTCGAGAT
GTATGTCAAT GGCGCCAAGC ACTGTGCCCA ACTTTGCAAA TCAGTATTAA TACTTCCCCC
GTACATTACA CTGACCCCGA GCATTGTATT ACCCTGTGGC TAGAAAAAAT GTTGATAAAT
CGCACCCCAC CACAAGCCGT GCTCTTGGAA ATCACCGAAA GCCTGCTGAT GGACGCGAAC
AAAAGTATTT CCACTAAATT GTTTCAATTC AGGCAAGCCG GAGTTGATAT CGCATTAGAT
GATTTTGGCA CAGGCTATTC GTCAATTTCT TACTTAAAAC GATACCCCAC CGACTTTCTT
AAAATAGATA AATCGTTTGT TCATTCCATG ACAGAGGTCA GTAACGACAA AGTGCTGTGT
GAAGCCATTA TCGTTATGGC CAAGAAATTA GGCATAAAGG TCGTTGCTGA AGGCATAGAA
ACGCAGGAGC AATATCATAT TTTGCAGAAA ATGGGGTGTG ATTATGGCCA AGGGTATTTA
TTCGCTAAAC CCCTTGAGCA CCACGCTTTT AATGCGTTAT TGCAGCAGCA TAAAGCAACC
TAA
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| Protein sequence | MKAAPRPSND KQRVSALHEL NILDTVAEER FDRITRLAAH SFGCQFASIS FIDEERQWYK
SVVNFPATDL DRNISFCAHT ITQDKALVVK DAHLSACFKD HPYVVSDPFL RFYAGIKITM
DGYHVGSLCV FDTQPKSFTC SDELILQDLA NMVESELQKE QLTHAAQTLR QYQNKLNETQ
KLTRVRNTIL EKIVHSVSLT SVLHEIVKAV ELEYLNQKCS ILLLKDKKLL CGAAPSLPSF
YNDAINGLDI GIGQGSCGTT AFTGVRTVVE DISSHPYWSA WTELAEKAEL GACWSEPVKA
SDGTVLGTFA IYHAYPAAPS TEELQRIEQF AYITSIAIER QNNSDLIWHQ ANFDELTQLP
NRNIMGEHLK QALNVAKRNQ TQVAVLFLDL DNFKDINDTL GHSVGDDLLV DCAQRIKDCI
RHKDIVARLG GDEFVVIIND IVDFSGLEKT AQKILKGLSR PYHLQSEIVH TSASIGITIY
PDDADDVSSL LKNADQAMYG AKAIGKNNYH YYTKNMRDAA VKRMALITDL RHAIDNDEFF
IVYQPIINLL DQSITKAEAL IRWRHPIRGL VGPDDFIPVA EETGLIIDIS DWVFEQVCRD
VCQWRQALCP TLQISINTSP VHYTDPEHCI TLWLEKMLIN RTPPQAVLLE ITESLLMDAN
KSISTKLFQF RQAGVDIALD DFGTGYSSIS YLKRYPTDFL KIDKSFVHSM TEVSNDKVLC
EAIIVMAKKL GIKVVAEGIE TQEQYHILQK MGCDYGQGYL FAKPLEHHAF NALLQQHKAT
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