| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2249 |
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| Symbol | |
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| ID | 4172403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2732348 |
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| End bp | 2735779 |
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| Gene Length | 3432 bp |
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| Protein Length | 1143 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638055259 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_661821 |
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| Protein GI | 109898566 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3300] MHYT domain (predicted integral membrane sensor domain) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.673162 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTTTC ATACCATTAT CAAAATTAAA GCTGGTGTTA CAGGGTTAAA AGTCGATACC
TTAAGCATCT ATTCTGTCCT TTTTATCTGT CCGATATTTA TGTATGAAGC TGTAAAAACA
ATGTTTGCGC CCGTAGACGA CAATTTACTG ATCGTAGGCG AATTTGACCT GATGTTGCTT
ATTGTATCAG TCGGTTTGGC GATTTTTGCG TCATTCATGG CAATGCTCGT CGCATCTCAA
AGTGCTTACA TGGAAAATGT TGTTAAAAGA AGGATCTTGT CCCTCGTAGC CAGTGTAGCC
TTAGGCGGGG GAGTTTGGGC GATGCACTTC GTCGGTATGT TGGCGTTTTC TTTGTGCACA
CCTATTGCCT ACAGTGCTGG CCTCACGGCT ACCTCAACTC TACCAAGTAT TTTAGCGTCT
TGGGTTGCGC TGACGACCAT CACCCGTAAA ACAGTTTCTG TGAATCGTTT GCTGGTAAGC
GGCATTCTGA TGGGGGCAGG TATCGGTACT ATGCACTATG TAGGCATGAG TGCGATGGAA
ATGGCGCCAA AACTGCGTTA CGACCTGGGT ACGTTCGCGC TCTCTATAGT TTTTGCCGTG
GTATTTTCAA TGCTCTCGCT ATGGATCCGC TTCGGGCTGA CCTTCATGGA TACTATGCGT
TACGGTAAAG TTTATCGTAA CGTCATTTCC GCAATCGTTA TGGGGTTAGC TATCTCAGGC
ATGCATTATA TAGGCATGGC AGCCGCACGA TTTGTTCGCC CCCCAGGTTT CGAATTTTCA
AGTCAAAGCG CGTACATTTC TCAATATTTA GGCTTCACTG TGGCGCTTAT TACCATTGGG
ATTATCGTGC TCGTACTGGC CTCAAACATG GTGCTTAAAT ATAAAGAGTT GACTGAGAAA
GCACGAATAA ATGAAGCACG GTTGCGTGCA ACCATAAACA CGTCAGTGGA TGGGGTGTTA
GGGTTTGACA GTAACGGCAT TGTAGACAGC GCCAATGACG CATTCTGCCA GTTAGTCGGT
TGTCGTTCTG ACGACATCAT TGGACAAGAT GTGCGCGTGT TAATAAGAAA GGAGAATATC
AACGAATTTA ATCAGTACCT TATCGATCGT ACTCAGGACA ATGGCCATGC TTTAGGTCGA
GGAAGAGACG CTCTTATTAA GCACTTCGAT GGCAGTTTGA TCCCGATACG TTTAGCAATA
GGTCATGTTC GGTTAAATAA AGAAAGTCAT TTCGTGGCAT TTATGTCCGA CTTGCGGTAT
CGCATCGAAA TGGAGCGAGC ACTGCGCGAA CGCGAAGCAC AATTTCGCTC TTTGATCAGC
AATATTCCAG GTATTGCTTA TCGCTGCAAG AATATGGAAA ACTGGCCCAT GGTGTTTATC
AGTGACGCGG TTGAATCAAT AACAGGTTAT CCAGCGGAAG ATTACATCTC GCCTGATCCC
AAGCGCCATT TTTATGAACA TGTTCACCCA GACGATATTG CGGATATTAC GCAAAAAGTA
CTTCCCCATG GGGAATTTCA ACTGGAATAC CGTATATACA ATGCAAAGGG CGATATTCGT
TGGTTGCTTG GTTATGGTAC ACATGTTGAT GACGAGGAGT CAGGGCAACG ATGGCTAGAT
GGCTTTATCA TGGATATCAC CGAACGTAAG GAAATGGAAC AATCATTACT CTTAGCCAAG
GACAAAGCTG AACAAGCTGC TTCTGCGAGG GCTGCTTTTC TAGCCAATAT GAGCCACGAG
ATCCGTACCC CGATGAATGC GATCATCGGT TTCAGTGACA TCTTGTTAGA TGATGCAATT
GAGCCTGACC AGAAAAAGCA CCTTACTACA ATAAATAAAT CTGCAAAGTC CTTGCTGCAC
CTCTTGAACG ACATTTTAGA CAGCGCCAAA CTAGACAAAG GGAAATTTGA TTTAGAGATG
CGCGACTTCT CATTAATAGA AGAAGTTGAC TCAGTTGTTT CAACGCTTTG GCTTGGTGCA
AGCAACAAAA ATTTGTATCT GAATGTCAAT ATTGATCCAG CCGTGGAGAA TCAATTTCAC
GGCGCTCCGG ACAGGATCCG GCAGGTTCTG ACTAATATTG TTGGCAACGC AATCAAGTTT
ACCTTAGAGG GCGGAATTGA TATCAACATA GGCGTAAAAC CGAGCGGCTG TATTGACTTC
TCGGTAAGTG ATACTGGTAT AGGGATGACG CCAGAGCAGC TAGCCTTGGT ATTTGATGCC
TTTGGACAAG CCGATGCCAG TATGAGTAGG CGTTTTGGAG GCACTGGCCT TGGAACGACG
ATCAGCAAAC AACTTGTTGA ACTCATGGGC GGTAAAATAT CGGCAACCAG TGAGTTTGGT
AAAGGAAGCT GTTTCTCGTT TTCTTTGCCT CTCGCGCCGC CTAAATCTGA TGAGTCAATG
GACGTGATTT ATCAGCGCTG TACTTTACCC CCTTTAACTA TGTTAATTGT TGATGATATT
CAACAAAATA TCGACCTGCT GTCACTGTTA ATGAAGCGTC AAGGACATAC GGTTGTGACG
GCTCGCGATG GTAAACAGGC ACTGCTTAGG ATGCGTAGCG AAAAGGTTGA CCTTGTATTG
ATGGATATTC AGATGCCCAT CATGGATGGC CTCACATCTG CAAAAGAGCG GCGTAAACAA
GAGCAGACTG AAAGTTTGCC CTATTTGCCG ATCATTGCCC TTACCGCCAG CGTATTAGCC
GAGGACAAAC AAGCTGCTTT AGACGCAGGG ATGGATGGAT TTGCCAATAA GCCCGTTGAT
ATAGAGCTTT TAAATGTAGA AATTGCCCAA GCTTTGGGAG TCGATTTAAG CTGTGAAATT
GAAGACCCTA CTGAGGTCAA TTCTAATGAT TCACATGTAA TAAATGAACG CCAGGGGATC
AGTTTGTGGG GCGATAAAAG CGTTTGGCTC AAAGAAGTTA GCGCGTTCAT GGAAAACAAC
CAAAGTAATA TTGTTGCACT AGGGCGCATG CAAGTGGCTC CTAATTGGCA GGAGATACAA
ACCAAGCTGC ATACTTTTAA AGGGCTGACT GGCAATCTAG CGCTAACCCA GCTGAGCGAT
TTAATCAGTG ATGCAGAGCG CTGCGCAATG ATAAAAAACA CACAAGATCT TGGTAGTGTG
TTTAAGGATA TCGATAGCGC CTTCGATGCA ATAAATAGCT ACTTGGCCAC CCAGCAAGTT
GGAGCGGATA CAGACTCTCA GCTAGACAAC CATGAAACAC TCAGTAAAAA AGAGCTTGTC
GATATTATTG AAACGCTTAT AACTTCAGCG CAAAACAATG AATACGACGA AGAGACAGCC
CAAGCACTGG TTGACGGTGC AAATAAGACT ATATTGGATA GATGCAAAAG CATACAAAAC
GCATTAGATG ATTTTGAATT TGAACAAGCT GTTCATCAAT TACAACAGCT TAGTATGTCG
AGTCTGTCGT AA
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| Protein sequence | MVFHTIIKIK AGVTGLKVDT LSIYSVLFIC PIFMYEAVKT MFAPVDDNLL IVGEFDLMLL
IVSVGLAIFA SFMAMLVASQ SAYMENVVKR RILSLVASVA LGGGVWAMHF VGMLAFSLCT
PIAYSAGLTA TSTLPSILAS WVALTTITRK TVSVNRLLVS GILMGAGIGT MHYVGMSAME
MAPKLRYDLG TFALSIVFAV VFSMLSLWIR FGLTFMDTMR YGKVYRNVIS AIVMGLAISG
MHYIGMAAAR FVRPPGFEFS SQSAYISQYL GFTVALITIG IIVLVLASNM VLKYKELTEK
ARINEARLRA TINTSVDGVL GFDSNGIVDS ANDAFCQLVG CRSDDIIGQD VRVLIRKENI
NEFNQYLIDR TQDNGHALGR GRDALIKHFD GSLIPIRLAI GHVRLNKESH FVAFMSDLRY
RIEMERALRE REAQFRSLIS NIPGIAYRCK NMENWPMVFI SDAVESITGY PAEDYISPDP
KRHFYEHVHP DDIADITQKV LPHGEFQLEY RIYNAKGDIR WLLGYGTHVD DEESGQRWLD
GFIMDITERK EMEQSLLLAK DKAEQAASAR AAFLANMSHE IRTPMNAIIG FSDILLDDAI
EPDQKKHLTT INKSAKSLLH LLNDILDSAK LDKGKFDLEM RDFSLIEEVD SVVSTLWLGA
SNKNLYLNVN IDPAVENQFH GAPDRIRQVL TNIVGNAIKF TLEGGIDINI GVKPSGCIDF
SVSDTGIGMT PEQLALVFDA FGQADASMSR RFGGTGLGTT ISKQLVELMG GKISATSEFG
KGSCFSFSLP LAPPKSDESM DVIYQRCTLP PLTMLIVDDI QQNIDLLSLL MKRQGHTVVT
ARDGKQALLR MRSEKVDLVL MDIQMPIMDG LTSAKERRKQ EQTESLPYLP IIALTASVLA
EDKQAALDAG MDGFANKPVD IELLNVEIAQ ALGVDLSCEI EDPTEVNSND SHVINERQGI
SLWGDKSVWL KEVSAFMENN QSNIVALGRM QVAPNWQEIQ TKLHTFKGLT GNLALTQLSD
LISDAERCAM IKNTQDLGSV FKDIDSAFDA INSYLATQQV GADTDSQLDN HETLSKKELV
DIIETLITSA QNNEYDEETA QALVDGANKT ILDRCKSIQN ALDDFEFEQA VHQLQQLSMS
SLS
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