| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2246 |
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| Symbol | |
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| ID | 4172400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2726999 |
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| End bp | 2729290 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638055256 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_661818 |
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| Protein GI | 109898563 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTCA TCGCTCGCCT TAAGTTACAA CTTAAAGATT ATTTCTATCT ACAAGATGAC
TACTCCCCCT TAGCCAGAGT CGAAGCTTGG CGCATAAGCT CGCTCCGCAT CATGCTCGTT
TCGATTTTAC TCTTGTGTTC TGTGTTTGTA ATTCAAAGCG CCTGGCAAAG TGTGACAGAA
AAAATAGCCT ATGTTATCCC CATGTCCCTC ACCTTTTATA TTGCATTGAC CGCTATGCTT
TTCATCTCCC GCCGTCACTA TTACTTGAGT TCTTGTGGTT TGATTGGCTT AATAGTGTTG
GCAGCAATCA GTTTCAACGC CACCCAGAAC AATCAAACCT TATCTATGCT CGGCCCTGTC
GTCATGTACT CTACGCCATT TGTTGCTTTT ATTTTATTAG GCTGGAAGGC GGGATTGTTT
TGTATTTTTC TAAACTTTTT ACCACTGTAT ATTTTAATAA ACCAGATTTC ATTAGCAGAT
TATTTCACCC CTTTTCCAGT ACTAAAACAT GCTAATTATT ACTTGCATGT CATCTTGTTC
GTTTTTACCA ATATTTGTAT TCCGTTGGCC ATCGCTCGAG CGAGTATCGC AGCAAAGCGA
GGTAACCAAT TTAACATTGA GCGTAATCAA ATACTCACTA GCCAAAACCA GTTATATCAC
GCTCTTTTTG TCGATGCTCA GACCGCGAAA ATCATCGTTG ATAACAAAAG AAATATTATT
GAAGCCAACG ACGCTGCTAT CTCTCTTTTG CGCAACAATT TGCCTAAACA GTTTATAGGA
GAACGAGTCG ACAGCATTTT TCCGGAATTA TCAGAACAAA ATGACAAACT AGTTGTTAAT
CGTACTTTAG GCGCAAAAAT GAAAGTACTC GAATTGAGTG CTCAGTCGAT AAACGATGAG
TTACACACCT TGATAACGAT TCAAGATGTA AGTGCTAAAG CATTACTTCA CAAGACTTTG
GCGGTGCAAA CCCAAGCAAG ACAACGCCAG AAGCTATATG ACGAGAACAT TGGCTTGCCG
AACCGACAAT GGTTAGAAAA TAAACTTTCA GCCAATGCGG CGCAATTCAA TACTGTCATT
TCGTTATGTG CGATTAGAAT AAACAATGCT CACTTTATTG AACAAAAATA CGGTTTCTTA
TATTTGCCAA AAGTGCTTAA AAGACTATCA ACGATATTAA GTGAGCAAAT AGGTGATCGT
AGTTGTATTG CAGTACTTGA TAAACACAGT TTAGGTTTTG CGATTTCCAT TCTGGATGAT
GCAATCATCA AAAGTGCAAT GCAGCAAGTG GTTTCAACAC TCCCTAGAAG TATAGTGTTT
GATGATATCT CCATACACGT TGATTGTAAG GCTGGGGTAG CTACTCATCA AATAGACGAA
GATGTAAGCC AGTTAATCAA TAACGCGCTG CATGCGGTGA CAGATAATGA CGCGGTGATA
AACTATTATG AAACTGGCAG CCAACAGCGC TTCATTGAAC ATCAGGAAAT CAGTATTTTA
CTTAATGAAG CGCTATCGAA CGACGAATTA TACGTGGATT ACCAGCCTAA AGTGCGCGGC
GATGGCACCA TCATTGGTAT GGAAGCGCTG CTGAGGTGGA ATTCCCCCAT CATTGGTGGC
GTATCCCCAG GGGTATTTAT TCCTATCGCT GAGCAGTCTG GTTTAGTGTT GCGACTCACC
CGTTGGTTAG TCAACCACGT ATGCATGCAG ATAAGGCAAT GGGAAGACGA AGGGCTGGAT
ATTGTGCCTG TTGCGATTAA TATTTCGGGC CCCGACCTAG ATCAGCCTGA TTTTAAAAAG
TACCTAATTA ATTGTGTGGT TGAACAGAAC ATCAAACCTC ACTTCATCGA GCTTGAATTG
ACTGAGTCGG CCAAAACCCG AAATATCCCC GACGCCATTG CCACAGTGCA ATATTTAGCA
AGCTTTGGAT TCTGTATCAC CTTAGATGAC TTTGGTGTGG GCTACTCTGG CTTATCTAAA
CTAACCAACT TCCCAGTACA AAGAGTAAAA ATAGACCGCC AGTTTATTAC TAATATTCAA
AGTGACGCTA AAAATGCACA AGTTGTCGAA GCTATTGTGG CCATGTGTAA GGTGTTTAAG
ATTGATGTAT TAGCTGAAGG CGTTGAAGAC CTACGAGAAG TAGACTGCCT ATTAGAAATG
GGGTGTAAAA GTTTTCAAGG TTTCGCTTTC GCCCGACCAA TGAGCAGACA GAACATCGCA
AAATTGATAG ACAAGACGCA AATGCCAAAC GTAAAGCTGC CATTACAACG TAAAAATATG
ATTAACAATT AA
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| Protein sequence | MSFIARLKLQ LKDYFYLQDD YSPLARVEAW RISSLRIMLV SILLLCSVFV IQSAWQSVTE
KIAYVIPMSL TFYIALTAML FISRRHYYLS SCGLIGLIVL AAISFNATQN NQTLSMLGPV
VMYSTPFVAF ILLGWKAGLF CIFLNFLPLY ILINQISLAD YFTPFPVLKH ANYYLHVILF
VFTNICIPLA IARASIAAKR GNQFNIERNQ ILTSQNQLYH ALFVDAQTAK IIVDNKRNII
EANDAAISLL RNNLPKQFIG ERVDSIFPEL SEQNDKLVVN RTLGAKMKVL ELSAQSINDE
LHTLITIQDV SAKALLHKTL AVQTQARQRQ KLYDENIGLP NRQWLENKLS ANAAQFNTVI
SLCAIRINNA HFIEQKYGFL YLPKVLKRLS TILSEQIGDR SCIAVLDKHS LGFAISILDD
AIIKSAMQQV VSTLPRSIVF DDISIHVDCK AGVATHQIDE DVSQLINNAL HAVTDNDAVI
NYYETGSQQR FIEHQEISIL LNEALSNDEL YVDYQPKVRG DGTIIGMEAL LRWNSPIIGG
VSPGVFIPIA EQSGLVLRLT RWLVNHVCMQ IRQWEDEGLD IVPVAINISG PDLDQPDFKK
YLINCVVEQN IKPHFIELEL TESAKTRNIP DAIATVQYLA SFGFCITLDD FGVGYSGLSK
LTNFPVQRVK IDRQFITNIQ SDAKNAQVVE AIVAMCKVFK IDVLAEGVED LREVDCLLEM
GCKSFQGFAF ARPMSRQNIA KLIDKTQMPN VKLPLQRKNM INN
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