Gene Patl_2239 details

Gene Information

• Locus tag: Patl_2239
• ID: 4172391
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2715099
• End bp: 2715800
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638055247
• Product: ABC transporter related
• Protein accession: YP_661811
• Protein GI: 109898556
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAATA TTGGTAAGGT CTTTACTACT GATGTAGTGC AAACCCATGC ACTCAAAGAT 
TTTACTTTAC AGGTCAACGA AGGGGATTTT TTGGCTGTAA CCGGTACTTC AGGCTCAGGT 
AAAACCACAT TCTTAAACGT GGCAGGTTTG CTCGAAACGT TCGATAGTGG CGAATACACT 
CTTGATGGGC AAGATATTCA GGGCTTGACC GACCGTCAGC GCAGTCAATT ACGCAATGAA 
AAGATAGGCT TTATTTTTCA AAGCTTTAAT CTAATTCCCG ATTTGAATTT ATTTGATAAT 
GTAGACGTGC CTCTGCGCTA CCGTGGCTTT AATACTGCCC AGCGTAAGGA GCGAATATTG 
AATAGCTTAG AGCGAGTTGG CTTAGGCAAG CGTTTAAAAC ATTTCCCTGC TCAGTTATCA 
GGTGGTCAGC AACAGCGAGT CGCTATCGCA CGGGCGCTAG CAGGCTCACC ACGATTTTTA 
CTGGCCGATG AGCCAACAGG TAATCTAGAC AGTGAGATGG CAAAAAGTGT GATGGCGTTG 
CTACAAGAAA TCAACCAAAG TGGCACGACT ATTATCATGG TCACTCACGA CCAAAGTTTA 
GCCCAGCAGG CTCAGCGACA AATAGTGGTG CGCGACGGCC GTGTGTGTGA CTCAAGTACA 
TCAAGCACTT CGCCCCAAGC AGATAGCGTA CAACGTGTTT AG 

 

Protein sequence

MNNIGKVFTT DVVQTHALKD FTLQVNEGDF LAVTGTSGSG KTTFLNVAGL LETFDSGEYT 
LDGQDIQGLT DRQRSQLRNE KIGFIFQSFN LIPDLNLFDN VDVPLRYRGF NTAQRKERIL 
NSLERVGLGK RLKHFPAQLS GGQQQRVAIA RALAGSPRFL LADEPTGNLD SEMAKSVMAL 
LQEINQSGTT IIMVTHDQSL AQQAQRQIVV RDGRVCDSST SSTSPQADSV QRV